Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00543

Experiment: mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00541 and MPMX20_00542 are separated by 66 nucleotidesMPMX20_00542 and MPMX20_00543 are separated by 74 nucleotidesMPMX20_00543 and MPMX20_00544 are separated by 12 nucleotides MPMX20_00541: MPMX20_00541 - hypothetical protein, at 563,300 to 565,684 _00541 MPMX20_00542: MPMX20_00542 - 2-iminobutanoate/2-iminopropanoate deaminase, at 565,751 to 566,137 _00542 MPMX20_00543: MPMX20_00543 - Aspartate carbamoyltransferase regulatory chain, at 566,212 to 566,673 _00543 MPMX20_00544: MPMX20_00544 - Aspartate carbamoyltransferase catalytic subunit, at 566,686 to 567,618 _00544 Position (kb) 566 567Strain fitness (log2 ratio) -2 -1 0 1 2 3at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.228 kb on + strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.236 kb on - strand, within MPMX20_00541at 565.246 kb on + strand, within MPMX20_00541at 565.246 kb on - strand, within MPMX20_00541at 565.344 kb on + strand, within MPMX20_00541at 565.350 kb on - strand, within MPMX20_00541at 565.515 kb on + strandat 565.557 kb on + strandat 565.578 kb on + strandat 565.578 kb on + strandat 565.592 kb on + strandat 565.600 kb on - strandat 565.600 kb on - strandat 565.723 kb on - strandat 565.799 kb on - strand, within MPMX20_00542at 565.799 kb on - strand, within MPMX20_00542at 565.818 kb on - strand, within MPMX20_00542at 565.828 kb on - strand, within MPMX20_00542at 565.830 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.952 kb on + strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.960 kb on - strand, within MPMX20_00542at 565.961 kb on + strand, within MPMX20_00542at 566.030 kb on - strand, within MPMX20_00542at 566.066 kb on + strand, within MPMX20_00542at 566.069 kb on - strand, within MPMX20_00542at 566.071 kb on + strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.074 kb on - strand, within MPMX20_00542at 566.086 kb on + strand, within MPMX20_00542at 566.094 kb on - strand, within MPMX20_00542at 566.132 kb on + strandat 566.132 kb on + strandat 566.159 kb on + strandat 566.185 kb on - strandat 566.185 kb on - strandat 566.231 kb on - strandat 566.319 kb on + strand, within MPMX20_00543at 566.328 kb on - strand, within MPMX20_00543at 566.345 kb on + strand, within MPMX20_00543at 566.358 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.397 kb on - strand, within MPMX20_00543at 566.402 kb on + strand, within MPMX20_00543at 566.411 kb on - strand, within MPMX20_00543at 566.444 kb on + strand, within MPMX20_00543at 566.510 kb on - strand, within MPMX20_00543at 566.532 kb on + strand, within MPMX20_00543at 566.546 kb on + strand, within MPMX20_00543at 566.546 kb on - strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.556 kb on + strand, within MPMX20_00543at 566.561 kb on + strand, within MPMX20_00543at 566.589 kb on + strand, within MPMX20_00543at 566.594 kb on + strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.597 kb on - strand, within MPMX20_00543at 566.604 kb on + strand, within MPMX20_00543at 566.612 kb on - strand, within MPMX20_00543at 566.665 kb on - strandat 566.725 kb on + strandat 566.727 kb on - strandat 566.765 kb on - strandat 566.790 kb on + strand, within MPMX20_00544at 566.798 kb on - strand, within MPMX20_00544at 566.882 kb on - strand, within MPMX20_00544at 566.882 kb on - strand, within MPMX20_00544at 566.885 kb on + strand, within MPMX20_00544at 566.893 kb on - strand, within MPMX20_00544at 566.960 kb on + strand, within MPMX20_00544at 566.998 kb on - strand, within MPMX20_00544at 567.024 kb on - strand, within MPMX20_00544at 567.095 kb on + strand, within MPMX20_00544at 567.108 kb on + strand, within MPMX20_00544at 567.149 kb on + strand, within MPMX20_00544at 567.169 kb on + strand, within MPMX20_00544at 567.169 kb on + strand, within MPMX20_00544at 567.177 kb on - strand, within MPMX20_00544at 567.177 kb on - strand, within MPMX20_00544at 567.177 kb on - strand, within MPMX20_00544at 567.180 kb on + strand, within MPMX20_00544at 567.203 kb on - strand, within MPMX20_00544at 567.339 kb on + strand, within MPMX20_00544at 567.383 kb on + strand, within MPMX20_00544at 567.435 kb on - strand, within MPMX20_00544at 567.445 kb on + strand, within MPMX20_00544at 567.554 kb on + strandat 567.562 kb on - strandat 567.572 kb on - strandat 567.651 kb on + strandat 567.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in LB
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565,228 + MPMX20_00541 0.81 +0.2
565,228 + MPMX20_00541 0.81 -0.5
565,228 + MPMX20_00541 0.81 -0.4
565,228 + MPMX20_00541 0.81 +1.4
565,228 + MPMX20_00541 0.81 +0.3
565,228 + MPMX20_00541 0.81 -0.7
565,228 + MPMX20_00541 0.81 -0.4
565,228 + MPMX20_00541 0.81 -0.8
565,228 + MPMX20_00541 0.81 +0.4
565,228 + MPMX20_00541 0.81 +1.2
565,228 + MPMX20_00541 0.81 +0.1
565,236 - MPMX20_00541 0.81 -0.0
565,236 - MPMX20_00541 0.81 -0.7
565,236 - MPMX20_00541 0.81 -0.1
565,246 + MPMX20_00541 0.82 +0.5
565,246 - MPMX20_00541 0.82 +1.9
565,344 + MPMX20_00541 0.86 -0.6
565,350 - MPMX20_00541 0.86 -2.2
565,515 + +0.8
565,557 + +1.1
565,578 + -0.9
565,578 + +0.6
565,592 + -1.5
565,600 - +0.3
565,600 - -0.3
565,723 - +0.1
565,799 - MPMX20_00542 0.12 +0.2
565,799 - MPMX20_00542 0.12 +0.8
565,818 - MPMX20_00542 0.17 -0.1
565,828 - MPMX20_00542 0.20 -1.0
565,830 + MPMX20_00542 0.20 -0.0
565,952 + MPMX20_00542 0.52 -1.0
565,952 + MPMX20_00542 0.52 -0.5
565,960 - MPMX20_00542 0.54 -0.7
565,960 - MPMX20_00542 0.54 -1.2
565,960 - MPMX20_00542 0.54 -0.9
565,961 + MPMX20_00542 0.54 -0.8
566,030 - MPMX20_00542 0.72 -0.1
566,066 + MPMX20_00542 0.81 -0.5
566,069 - MPMX20_00542 0.82 -0.2
566,071 + MPMX20_00542 0.83 +0.1
566,074 - MPMX20_00542 0.83 -0.5
566,074 - MPMX20_00542 0.83 -0.6
566,086 + MPMX20_00542 0.87 -2.6
566,094 - MPMX20_00542 0.89 -0.6
566,132 + +1.9
566,132 + +1.2
566,159 + +0.6
566,185 - +0.2
566,185 - +0.0
566,231 - -0.2
566,319 + MPMX20_00543 0.23 +1.8
566,328 - MPMX20_00543 0.25 +2.1
566,345 + MPMX20_00543 0.29 +1.2
566,358 - MPMX20_00543 0.32 +0.0
566,397 - MPMX20_00543 0.40 +0.2
566,397 - MPMX20_00543 0.40 -0.4
566,402 + MPMX20_00543 0.41 -0.4
566,411 - MPMX20_00543 0.43 -0.1
566,444 + MPMX20_00543 0.50 +0.0
566,510 - MPMX20_00543 0.65 -0.2
566,532 + MPMX20_00543 0.69 +1.3
566,546 + MPMX20_00543 0.72 -0.5
566,546 - MPMX20_00543 0.72 +0.1
566,556 + MPMX20_00543 0.74 +0.7
566,556 + MPMX20_00543 0.74 -1.4
566,561 + MPMX20_00543 0.76 +1.1
566,589 + MPMX20_00543 0.82 +0.3
566,594 + MPMX20_00543 0.83 +1.6
566,597 - MPMX20_00543 0.83 +0.3
566,597 - MPMX20_00543 0.83 +1.8
566,604 + MPMX20_00543 0.85 +0.0
566,612 - MPMX20_00543 0.87 +0.0
566,665 - +0.9
566,725 + +1.9
566,727 - +0.9
566,765 - +1.2
566,790 + MPMX20_00544 0.11 +2.9
566,798 - MPMX20_00544 0.12 -0.9
566,882 - MPMX20_00544 0.21 -2.0
566,882 - MPMX20_00544 0.21 +0.4
566,885 + MPMX20_00544 0.21 +1.3
566,893 - MPMX20_00544 0.22 +0.3
566,960 + MPMX20_00544 0.29 -1.1
566,998 - MPMX20_00544 0.33 -0.8
567,024 - MPMX20_00544 0.36 +0.0
567,095 + MPMX20_00544 0.44 -0.8
567,108 + MPMX20_00544 0.45 +0.5
567,149 + MPMX20_00544 0.50 +1.9
567,169 + MPMX20_00544 0.52 -2.4
567,169 + MPMX20_00544 0.52 -0.6
567,177 - MPMX20_00544 0.53 +0.3
567,177 - MPMX20_00544 0.53 -1.3
567,177 - MPMX20_00544 0.53 +1.4
567,180 + MPMX20_00544 0.53 +0.6
567,203 - MPMX20_00544 0.55 -0.8
567,339 + MPMX20_00544 0.70 +0.4
567,383 + MPMX20_00544 0.75 +0.5
567,435 - MPMX20_00544 0.80 -1.1
567,445 + MPMX20_00544 0.81 +0.3
567,554 + -0.3
567,562 - +0.8
567,572 - +0.7
567,651 + +0.9
567,654 + -0.7

Or see this region's nucleotide sequence