Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02095

Experiment: Aerobic, pH7.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02085 and ABCV34_RS02090 are separated by 326 nucleotidesABCV34_RS02090 and ABCV34_RS02095 are separated by 134 nucleotidesABCV34_RS02095 and ABCV34_RS02100 are separated by 125 nucleotidesABCV34_RS02100 and ABCV34_RS02105 are separated by 79 nucleotides ABCV34_RS02085: ABCV34_RS02085 - hypothetical protein, at 468,862 to 469,350 _RS02085 ABCV34_RS02090: ABCV34_RS02090 - hypothetical protein, at 469,677 to 470,165 _RS02090 ABCV34_RS02095: ABCV34_RS02095 - site-specific integrase, at 470,300 to 471,298 _RS02095 ABCV34_RS02100: ABCV34_RS02100 - tRNA-Met, at 471,424 to 471,500 _RS02100 ABCV34_RS02105: ABCV34_RS02105 - SMC-Scp complex subunit ScpB, at 471,580 to 472,200 _RS02105 Position (kb) 470 471 472Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 469.302 kb on + strandat 469.441 kb on + strandat 469.461 kb on + strandat 469.549 kb on + strandat 469.550 kb on - strandat 469.629 kb on + strandat 469.629 kb on + strandat 469.629 kb on + strandat 469.671 kb on + strandat 469.700 kb on + strandat 469.791 kb on + strand, within ABCV34_RS02090at 469.856 kb on - strand, within ABCV34_RS02090at 469.872 kb on + strand, within ABCV34_RS02090at 469.872 kb on + strand, within ABCV34_RS02090at 469.873 kb on - strand, within ABCV34_RS02090at 470.073 kb on + strand, within ABCV34_RS02090at 470.073 kb on + strand, within ABCV34_RS02090at 470.073 kb on + strand, within ABCV34_RS02090at 470.073 kb on + strand, within ABCV34_RS02090at 470.074 kb on - strand, within ABCV34_RS02090at 470.074 kb on - strand, within ABCV34_RS02090at 470.074 kb on - strand, within ABCV34_RS02090at 470.074 kb on - strand, within ABCV34_RS02090at 470.115 kb on + strand, within ABCV34_RS02090at 470.115 kb on + strand, within ABCV34_RS02090at 470.116 kb on - strand, within ABCV34_RS02090at 470.116 kb on - strand, within ABCV34_RS02090at 470.116 kb on - strand, within ABCV34_RS02090at 470.324 kb on + strandat 470.325 kb on - strandat 470.349 kb on + strandat 470.350 kb on - strandat 470.350 kb on - strandat 470.352 kb on + strandat 470.352 kb on + strandat 470.353 kb on - strandat 470.608 kb on + strand, within ABCV34_RS02095at 470.608 kb on + strand, within ABCV34_RS02095at 470.609 kb on - strand, within ABCV34_RS02095at 470.609 kb on - strand, within ABCV34_RS02095at 470.609 kb on - strand, within ABCV34_RS02095at 470.693 kb on + strand, within ABCV34_RS02095at 470.693 kb on + strand, within ABCV34_RS02095at 470.693 kb on + strand, within ABCV34_RS02095at 470.693 kb on + strand, within ABCV34_RS02095at 470.693 kb on + strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.694 kb on - strand, within ABCV34_RS02095at 470.740 kb on + strand, within ABCV34_RS02095at 470.740 kb on + strand, within ABCV34_RS02095at 470.740 kb on + strand, within ABCV34_RS02095at 470.740 kb on + strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.741 kb on - strand, within ABCV34_RS02095at 470.833 kb on + strand, within ABCV34_RS02095at 470.833 kb on + strand, within ABCV34_RS02095at 470.833 kb on + strand, within ABCV34_RS02095at 470.833 kb on + strand, within ABCV34_RS02095at 470.833 kb on + strand, within ABCV34_RS02095at 470.834 kb on - strand, within ABCV34_RS02095at 470.834 kb on - strand, within ABCV34_RS02095at 470.863 kb on + strand, within ABCV34_RS02095at 470.864 kb on - strand, within ABCV34_RS02095at 470.864 kb on - strand, within ABCV34_RS02095at 470.918 kb on + strand, within ABCV34_RS02095at 470.918 kb on + strand, within ABCV34_RS02095at 470.970 kb on + strand, within ABCV34_RS02095at 470.971 kb on - strand, within ABCV34_RS02095at 470.990 kb on - strand, within ABCV34_RS02095at 471.070 kb on + strand, within ABCV34_RS02095at 471.097 kb on - strand, within ABCV34_RS02095at 471.097 kb on - strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.146 kb on + strand, within ABCV34_RS02095at 471.147 kb on - strand, within ABCV34_RS02095at 471.147 kb on - strand, within ABCV34_RS02095at 471.147 kb on - strand, within ABCV34_RS02095at 471.264 kb on + strandat 471.265 kb on - strandat 471.270 kb on + strandat 471.271 kb on - strandat 471.271 kb on - strandat 471.271 kb on - strandat 471.271 kb on - strandat 471.271 kb on - strandat 471.337 kb on + strandat 471.377 kb on - strandat 471.421 kb on - strandat 471.576 kb on + strandat 471.576 kb on + strandat 471.576 kb on + strandat 471.605 kb on + strandat 471.675 kb on + strand, within ABCV34_RS02105at 471.675 kb on + strand, within ABCV34_RS02105at 472.160 kb on + strandat 472.160 kb on + strandat 472.283 kb on + strandat 472.283 kb on + strandat 472.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, pH7.5
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469,302 + -1.0
469,441 + -0.2
469,461 + -1.6
469,549 + -2.8
469,550 - +0.0
469,629 + -2.8
469,629 + -1.3
469,629 + -3.1
469,671 + -2.2
469,700 + -2.3
469,791 + ABCV34_RS02090 0.23 -2.0
469,856 - ABCV34_RS02090 0.37 -1.2
469,872 + ABCV34_RS02090 0.40 -2.1
469,872 + ABCV34_RS02090 0.40 -2.7
469,873 - ABCV34_RS02090 0.40 -0.8
470,073 + ABCV34_RS02090 0.81 -1.6
470,073 + ABCV34_RS02090 0.81 -2.8
470,073 + ABCV34_RS02090 0.81 -2.6
470,073 + ABCV34_RS02090 0.81 -2.9
470,074 - ABCV34_RS02090 0.81 -1.6
470,074 - ABCV34_RS02090 0.81 -2.3
470,074 - ABCV34_RS02090 0.81 -2.6
470,074 - ABCV34_RS02090 0.81 -2.1
470,115 + ABCV34_RS02090 0.90 -3.1
470,115 + ABCV34_RS02090 0.90 -2.6
470,116 - ABCV34_RS02090 0.90 -2.9
470,116 - ABCV34_RS02090 0.90 -0.7
470,116 - ABCV34_RS02090 0.90 -2.3
470,324 + -2.0
470,325 - -3.3
470,349 + -3.3
470,350 - -2.0
470,350 - -3.0
470,352 + +0.0
470,352 + -3.0
470,353 - -0.7
470,608 + ABCV34_RS02095 0.31 -3.1
470,608 + ABCV34_RS02095 0.31 -2.8
470,609 - ABCV34_RS02095 0.31 -3.0
470,609 - ABCV34_RS02095 0.31 -2.8
470,609 - ABCV34_RS02095 0.31 -2.7
470,693 + ABCV34_RS02095 0.39 -2.3
470,693 + ABCV34_RS02095 0.39 -2.7
470,693 + ABCV34_RS02095 0.39 -2.1
470,693 + ABCV34_RS02095 0.39 -2.6
470,693 + ABCV34_RS02095 0.39 -2.8
470,694 - ABCV34_RS02095 0.39 -2.1
470,694 - ABCV34_RS02095 0.39 -1.6
470,694 - ABCV34_RS02095 0.39 -2.3
470,694 - ABCV34_RS02095 0.39 -1.6
470,694 - ABCV34_RS02095 0.39 -4.1
470,694 - ABCV34_RS02095 0.39 -0.3
470,694 - ABCV34_RS02095 0.39 -2.1
470,740 + ABCV34_RS02095 0.44 -2.8
470,740 + ABCV34_RS02095 0.44 +0.0
470,740 + ABCV34_RS02095 0.44 -2.7
470,740 + ABCV34_RS02095 0.44 -2.6
470,741 - ABCV34_RS02095 0.44 -1.0
470,741 - ABCV34_RS02095 0.44 -2.6
470,741 - ABCV34_RS02095 0.44 -2.7
470,741 - ABCV34_RS02095 0.44 -2.9
470,741 - ABCV34_RS02095 0.44 -2.6
470,741 - ABCV34_RS02095 0.44 -1.0
470,741 - ABCV34_RS02095 0.44 -3.1
470,741 - ABCV34_RS02095 0.44 -4.7
470,833 + ABCV34_RS02095 0.53 -3.2
470,833 + ABCV34_RS02095 0.53 -2.1
470,833 + ABCV34_RS02095 0.53 -2.7
470,833 + ABCV34_RS02095 0.53 -3.1
470,833 + ABCV34_RS02095 0.53 -3.4
470,834 - ABCV34_RS02095 0.53 -2.6
470,834 - ABCV34_RS02095 0.53 -1.9
470,863 + ABCV34_RS02095 0.56 -1.6
470,864 - ABCV34_RS02095 0.56 -3.1
470,864 - ABCV34_RS02095 0.56 -3.4
470,918 + ABCV34_RS02095 0.62 -1.1
470,918 + ABCV34_RS02095 0.62 -2.6
470,970 + ABCV34_RS02095 0.67 -2.4
470,971 - ABCV34_RS02095 0.67 -3.4
470,990 - ABCV34_RS02095 0.69 -2.6
471,070 + ABCV34_RS02095 0.77 -3.4
471,097 - ABCV34_RS02095 0.80 -3.1
471,097 - ABCV34_RS02095 0.80 -1.0
471,146 + ABCV34_RS02095 0.85 -4.8
471,146 + ABCV34_RS02095 0.85 -2.2
471,146 + ABCV34_RS02095 0.85 -1.3
471,146 + ABCV34_RS02095 0.85 -2.8
471,146 + ABCV34_RS02095 0.85 -1.2
471,146 + ABCV34_RS02095 0.85 -1.9
471,147 - ABCV34_RS02095 0.85 -1.8
471,147 - ABCV34_RS02095 0.85 -2.5
471,147 - ABCV34_RS02095 0.85 -2.4
471,264 + -3.8
471,265 - -3.3
471,270 + -2.6
471,271 - -2.0
471,271 - -2.0
471,271 - -2.0
471,271 - -1.6
471,271 - -3.9
471,337 + -2.0
471,377 - -2.1
471,421 - -2.7
471,576 + -2.5
471,576 + -1.6
471,576 + -2.0
471,605 + -1.6
471,675 + ABCV34_RS02105 0.15 -2.6
471,675 + ABCV34_RS02105 0.15 -2.3
472,160 + -3.6
472,160 + -2.7
472,283 + -2.4
472,283 + -3.9
472,292 + -1.6

Or see this region's nucleotide sequence