Experiment: mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02464 and MPMX20_02465 are separated by 28 nucleotides MPMX20_02465 and MPMX20_02466 overlap by 14 nucleotides MPMX20_02466 and MPMX20_02467 are separated by 22 nucleotides
MPMX20_02464: MPMX20_02464 - L-threonine 3-dehydrogenase, at 2,605,201 to 2,606,253
_02464
MPMX20_02465: MPMX20_02465 - Inner membrane ABC transporter permease protein YcjP, at 2,606,282 to 2,607,124
_02465
MPMX20_02466: MPMX20_02466 - Inner membrane ABC transporter permease protein YcjO, at 2,607,111 to 2,607,992
_02466
MPMX20_02467: MPMX20_02467 - hypothetical protein, at 2,608,015 to 2,609,307
_02467
Position (kb)
2607
2608 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2606.142 kb on + strand, within MPMX20_02464 at 2606.222 kb on + strand at 2606.293 kb on - strand at 2606.293 kb on - strand at 2606.325 kb on + strand at 2606.326 kb on + strand at 2606.335 kb on + strand at 2606.404 kb on - strand, within MPMX20_02465 at 2606.417 kb on - strand, within MPMX20_02465 at 2606.578 kb on + strand, within MPMX20_02465 at 2606.586 kb on - strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.644 kb on + strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.652 kb on - strand, within MPMX20_02465 at 2606.655 kb on + strand, within MPMX20_02465 at 2606.675 kb on - strand, within MPMX20_02465 at 2606.679 kb on - strand, within MPMX20_02465 at 2606.695 kb on - strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.768 kb on + strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.776 kb on - strand, within MPMX20_02465 at 2606.846 kb on - strand, within MPMX20_02465 at 2606.932 kb on + strand, within MPMX20_02465 at 2606.961 kb on + strand, within MPMX20_02465 at 2607.014 kb on + strand, within MPMX20_02465 at 2607.020 kb on - strand, within MPMX20_02465 at 2607.032 kb on - strand, within MPMX20_02465 at 2607.050 kb on - strand at 2607.068 kb on - strand at 2607.070 kb on + strand at 2607.082 kb on + strand at 2607.090 kb on - strand at 2607.128 kb on + strand at 2607.204 kb on + strand, within MPMX20_02466 at 2607.210 kb on - strand, within MPMX20_02466 at 2607.231 kb on + strand, within MPMX20_02466 at 2607.233 kb on + strand, within MPMX20_02466 at 2607.237 kb on + strand, within MPMX20_02466 at 2607.237 kb on - strand, within MPMX20_02466 at 2607.241 kb on - strand, within MPMX20_02466 at 2607.299 kb on - strand, within MPMX20_02466 at 2607.302 kb on + strand, within MPMX20_02466 at 2607.317 kb on + strand, within MPMX20_02466 at 2607.325 kb on + strand, within MPMX20_02466 at 2607.325 kb on - strand, within MPMX20_02466 at 2607.326 kb on - strand, within MPMX20_02466 at 2607.330 kb on + strand, within MPMX20_02466 at 2607.333 kb on - strand, within MPMX20_02466 at 2607.341 kb on + strand, within MPMX20_02466 at 2607.349 kb on - strand, within MPMX20_02466 at 2607.406 kb on + strand, within MPMX20_02466 at 2607.500 kb on + strand, within MPMX20_02466 at 2607.508 kb on - strand, within MPMX20_02466 at 2607.550 kb on - strand, within MPMX20_02466 at 2607.560 kb on + strand, within MPMX20_02466 at 2607.560 kb on + strand, within MPMX20_02466 at 2607.638 kb on + strand, within MPMX20_02466 at 2607.646 kb on - strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.720 kb on + strand, within MPMX20_02466 at 2607.728 kb on - strand, within MPMX20_02466 at 2607.728 kb on - strand, within MPMX20_02466 at 2607.728 kb on - strand, within MPMX20_02466 at 2607.730 kb on + strand, within MPMX20_02466 at 2607.738 kb on - strand, within MPMX20_02466 at 2607.738 kb on - strand, within MPMX20_02466 at 2607.743 kb on + strand, within MPMX20_02466 at 2607.746 kb on - strand, within MPMX20_02466 at 2607.747 kb on - strand, within MPMX20_02466 at 2607.765 kb on + strand, within MPMX20_02466 at 2607.814 kb on + strand, within MPMX20_02466 at 2607.814 kb on + strand, within MPMX20_02466 at 2607.822 kb on - strand, within MPMX20_02466 at 2607.822 kb on - strand, within MPMX20_02466 at 2607.838 kb on + strand, within MPMX20_02466 at 2607.911 kb on - strand at 2607.960 kb on - strand at 2608.065 kb on - strand at 2608.088 kb on + strand at 2608.096 kb on - strand at 2608.104 kb on + strand at 2608.104 kb on - strand at 2608.109 kb on + strand at 2608.128 kb on + strand at 2608.136 kb on - strand at 2608.187 kb on + strand, within MPMX20_02467 at 2608.195 kb on - strand, within MPMX20_02467 at 2608.195 kb on - strand, within MPMX20_02467 at 2608.322 kb on + strand, within MPMX20_02467 at 2608.325 kb on - strand, within MPMX20_02467 at 2608.334 kb on - strand, within MPMX20_02467 at 2608.341 kb on - strand, within MPMX20_02467 at 2608.362 kb on + strand, within MPMX20_02467 at 2608.365 kb on - strand, within MPMX20_02467 at 2608.365 kb on - strand, within MPMX20_02467 at 2608.380 kb on - strand, within MPMX20_02467 at 2608.420 kb on + strand, within MPMX20_02467 at 2608.459 kb on + strand, within MPMX20_02467 at 2608.459 kb on + strand, within MPMX20_02467 at 2608.459 kb on + strand, within MPMX20_02467 at 2608.467 kb on - strand, within MPMX20_02467 at 2608.467 kb on - strand, within MPMX20_02467 at 2608.510 kb on + strand, within MPMX20_02467 at 2608.527 kb on + strand, within MPMX20_02467 at 2608.568 kb on - strand, within MPMX20_02467 at 2608.585 kb on + strand, within MPMX20_02467 at 2608.594 kb on + strand, within MPMX20_02467 at 2608.602 kb on - strand, within MPMX20_02467 at 2608.738 kb on - strand, within MPMX20_02467 at 2608.738 kb on - strand, within MPMX20_02467 at 2608.740 kb on + strand, within MPMX20_02467 at 2608.777 kb on - strand, within MPMX20_02467 at 2608.785 kb on - strand, within MPMX20_02467 at 2608.800 kb on + strand, within MPMX20_02467 at 2608.800 kb on + strand, within MPMX20_02467 at 2608.800 kb on + strand, within MPMX20_02467 at 2608.808 kb on - strand, within MPMX20_02467 at 2608.818 kb on + strand, within MPMX20_02467 at 2608.818 kb on + strand, within MPMX20_02467 at 2608.867 kb on - strand, within MPMX20_02467 at 2608.869 kb on + strand, within MPMX20_02467 at 2608.870 kb on - strand, within MPMX20_02467 at 2608.877 kb on - strand, within MPMX20_02467 at 2608.877 kb on - strand, within MPMX20_02467 at 2608.879 kb on + strand, within MPMX20_02467 at 2608.899 kb on - strand, within MPMX20_02467 at 2608.899 kb on - strand, within MPMX20_02467 at 2608.901 kb on + strand, within MPMX20_02467 at 2608.911 kb on - strand, within MPMX20_02467 at 2608.911 kb on - strand, within MPMX20_02467 at 2608.911 kb on - strand, within MPMX20_02467 at 2608.911 kb on - strand, within MPMX20_02467 at 2608.978 kb on + strand, within MPMX20_02467
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB remove 2,606,142 + MPMX20_02464 0.89 +0.1 2,606,222 + -0.9 2,606,293 - +2.4 2,606,293 - -0.5 2,606,325 + -1.4 2,606,326 + +2.9 2,606,335 + -0.5 2,606,404 - MPMX20_02465 0.14 +0.4 2,606,417 - MPMX20_02465 0.16 +0.0 2,606,578 + MPMX20_02465 0.35 +0.5 2,606,586 - MPMX20_02465 0.36 +0.6 2,606,644 + MPMX20_02465 0.43 -0.2 2,606,644 + MPMX20_02465 0.43 +0.2 2,606,644 + MPMX20_02465 0.43 +0.7 2,606,652 - MPMX20_02465 0.44 +0.8 2,606,652 - MPMX20_02465 0.44 +0.0 2,606,652 - MPMX20_02465 0.44 +0.1 2,606,655 + MPMX20_02465 0.44 -0.2 2,606,675 - MPMX20_02465 0.47 +0.1 2,606,679 - MPMX20_02465 0.47 +0.3 2,606,695 - MPMX20_02465 0.49 -0.7 2,606,768 + MPMX20_02465 0.58 -0.5 2,606,768 + MPMX20_02465 0.58 -0.1 2,606,768 + MPMX20_02465 0.58 -0.7 2,606,768 + MPMX20_02465 0.58 -0.5 2,606,768 + MPMX20_02465 0.58 +0.4 2,606,776 - MPMX20_02465 0.59 -0.4 2,606,776 - MPMX20_02465 0.59 -0.9 2,606,776 - MPMX20_02465 0.59 +0.6 2,606,776 - MPMX20_02465 0.59 -0.2 2,606,776 - MPMX20_02465 0.59 -0.9 2,606,846 - MPMX20_02465 0.67 +0.3 2,606,932 + MPMX20_02465 0.77 -0.6 2,606,961 + MPMX20_02465 0.81 +0.6 2,607,014 + MPMX20_02465 0.87 +0.8 2,607,020 - MPMX20_02465 0.88 -0.4 2,607,032 - MPMX20_02465 0.89 +0.1 2,607,050 - +0.9 2,607,068 - -0.6 2,607,070 + -1.7 2,607,082 + -0.5 2,607,090 - +0.2 2,607,128 + -1.1 2,607,204 + MPMX20_02466 0.11 +0.1 2,607,210 - MPMX20_02466 0.11 +0.4 2,607,231 + MPMX20_02466 0.14 -0.8 2,607,233 + MPMX20_02466 0.14 +0.1 2,607,237 + MPMX20_02466 0.14 +0.8 2,607,237 - MPMX20_02466 0.14 -0.1 2,607,241 - MPMX20_02466 0.15 +1.1 2,607,299 - MPMX20_02466 0.21 -0.5 2,607,302 + MPMX20_02466 0.22 +0.5 2,607,317 + MPMX20_02466 0.23 +0.1 2,607,325 + MPMX20_02466 0.24 +0.2 2,607,325 - MPMX20_02466 0.24 -1.3 2,607,326 - MPMX20_02466 0.24 +1.1 2,607,330 + MPMX20_02466 0.25 -0.1 2,607,333 - MPMX20_02466 0.25 -0.1 2,607,341 + MPMX20_02466 0.26 -0.3 2,607,349 - MPMX20_02466 0.27 +0.4 2,607,406 + MPMX20_02466 0.33 +0.9 2,607,500 + MPMX20_02466 0.44 -0.1 2,607,508 - MPMX20_02466 0.45 -2.9 2,607,550 - MPMX20_02466 0.50 -0.5 2,607,560 + MPMX20_02466 0.51 +0.4 2,607,560 + MPMX20_02466 0.51 -0.2 2,607,638 + MPMX20_02466 0.60 +0.1 2,607,646 - MPMX20_02466 0.61 -0.5 2,607,720 + MPMX20_02466 0.69 +0.9 2,607,720 + MPMX20_02466 0.69 +0.1 2,607,720 + MPMX20_02466 0.69 +3.9 2,607,720 + MPMX20_02466 0.69 -1.2 2,607,720 + MPMX20_02466 0.69 -0.5 2,607,720 + MPMX20_02466 0.69 +0.1 2,607,728 - MPMX20_02466 0.70 -0.1 2,607,728 - MPMX20_02466 0.70 -0.6 2,607,728 - MPMX20_02466 0.70 +0.2 2,607,730 + MPMX20_02466 0.70 -0.3 2,607,738 - MPMX20_02466 0.71 -0.1 2,607,738 - MPMX20_02466 0.71 -0.0 2,607,743 + MPMX20_02466 0.72 -0.7 2,607,746 - MPMX20_02466 0.72 +1.0 2,607,747 - MPMX20_02466 0.72 +0.2 2,607,765 + MPMX20_02466 0.74 -0.7 2,607,814 + MPMX20_02466 0.80 +0.8 2,607,814 + MPMX20_02466 0.80 +0.1 2,607,822 - MPMX20_02466 0.81 -0.1 2,607,822 - MPMX20_02466 0.81 +1.2 2,607,838 + MPMX20_02466 0.82 -0.1 2,607,911 - +0.2 2,607,960 - +0.1 2,608,065 - +0.2 2,608,088 + -0.2 2,608,096 - +0.4 2,608,104 + +1.6 2,608,104 - -0.5 2,608,109 + -1.7 2,608,128 + +0.2 2,608,136 - -1.3 2,608,187 + MPMX20_02467 0.13 -0.5 2,608,195 - MPMX20_02467 0.14 -0.5 2,608,195 - MPMX20_02467 0.14 +0.1 2,608,322 + MPMX20_02467 0.24 -0.1 2,608,325 - MPMX20_02467 0.24 -0.3 2,608,334 - MPMX20_02467 0.25 -0.1 2,608,341 - MPMX20_02467 0.25 -0.4 2,608,362 + MPMX20_02467 0.27 +0.5 2,608,365 - MPMX20_02467 0.27 -0.6 2,608,365 - MPMX20_02467 0.27 +0.3 2,608,380 - MPMX20_02467 0.28 +0.7 2,608,420 + MPMX20_02467 0.31 +0.2 2,608,459 + MPMX20_02467 0.34 +2.4 2,608,459 + MPMX20_02467 0.34 +0.2 2,608,459 + MPMX20_02467 0.34 -2.6 2,608,467 - MPMX20_02467 0.35 -2.8 2,608,467 - MPMX20_02467 0.35 +0.6 2,608,510 + MPMX20_02467 0.38 +0.4 2,608,527 + MPMX20_02467 0.40 -0.9 2,608,568 - MPMX20_02467 0.43 -0.2 2,608,585 + MPMX20_02467 0.44 +0.1 2,608,594 + MPMX20_02467 0.45 -1.2 2,608,602 - MPMX20_02467 0.45 +2.6 2,608,738 - MPMX20_02467 0.56 -0.6 2,608,738 - MPMX20_02467 0.56 +0.1 2,608,740 + MPMX20_02467 0.56 -1.7 2,608,777 - MPMX20_02467 0.59 +0.1 2,608,785 - MPMX20_02467 0.60 -0.6 2,608,800 + MPMX20_02467 0.61 +0.0 2,608,800 + MPMX20_02467 0.61 +0.5 2,608,800 + MPMX20_02467 0.61 -0.2 2,608,808 - MPMX20_02467 0.61 +0.1 2,608,818 + MPMX20_02467 0.62 -0.1 2,608,818 + MPMX20_02467 0.62 +0.2 2,608,867 - MPMX20_02467 0.66 -0.9 2,608,869 + MPMX20_02467 0.66 -1.3 2,608,870 - MPMX20_02467 0.66 -0.5 2,608,877 - MPMX20_02467 0.67 +0.1 2,608,877 - MPMX20_02467 0.67 +0.3 2,608,879 + MPMX20_02467 0.67 +0.9 2,608,899 - MPMX20_02467 0.68 +1.6 2,608,899 - MPMX20_02467 0.68 -0.3 2,608,901 + MPMX20_02467 0.69 +1.1 2,608,911 - MPMX20_02467 0.69 +0.1 2,608,911 - MPMX20_02467 0.69 -0.0 2,608,911 - MPMX20_02467 0.69 -0.4 2,608,911 - MPMX20_02467 0.69 -1.5 2,608,978 + MPMX20_02467 0.74 +0.4
Or see this region's nucleotide sequence