Experiment: mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02917 and MPMX20_02918 are separated by 163 nucleotides MPMX20_02918 and MPMX20_02919 overlap by 1 nucleotides MPMX20_02919 and MPMX20_02920 are separated by 70 nucleotides MPMX20_02920 and MPMX20_02921 are separated by 7 nucleotides MPMX20_02921 and MPMX20_02922 are separated by 18 nucleotides
MPMX20_02917: MPMX20_02917 - hypothetical protein, at 3,055,301 to 3,055,450
_02917
MPMX20_02918: MPMX20_02918 - hypothetical protein, at 3,055,614 to 3,055,742
_02918
MPMX20_02919: MPMX20_02919 - hypothetical protein, at 3,055,742 to 3,055,939
_02919
MPMX20_02920: MPMX20_02920 - hypothetical protein, at 3,056,010 to 3,056,981
_02920
MPMX20_02921: MPMX20_02921 - hypothetical protein, at 3,056,989 to 3,057,273
_02921
MPMX20_02922: MPMX20_02922 - hypothetical protein, at 3,057,292 to 3,058,137
_02922
Position (kb)
3056
3057 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.039 kb on + strand at 3055.054 kb on + strand at 3055.095 kb on + strand at 3055.095 kb on + strand at 3055.102 kb on + strand at 3055.103 kb on - strand at 3055.127 kb on + strand at 3055.161 kb on + strand at 3055.169 kb on - strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.276 kb on + strand at 3055.398 kb on + strand, within MPMX20_02917 at 3055.398 kb on + strand, within MPMX20_02917 at 3055.399 kb on + strand, within MPMX20_02917 at 3055.416 kb on - strand, within MPMX20_02917 at 3055.437 kb on - strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.481 kb on - strand at 3055.524 kb on - strand at 3055.542 kb on + strand at 3055.566 kb on + strand at 3055.631 kb on + strand, within MPMX20_02918 at 3055.638 kb on - strand, within MPMX20_02918 at 3055.706 kb on + strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.731 kb on + strand at 3055.732 kb on + strand at 3055.762 kb on + strand, within MPMX20_02919 at 3055.766 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.814 kb on + strand, within MPMX20_02919 at 3055.853 kb on + strand, within MPMX20_02919 at 3055.856 kb on - strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.876 kb on - strand, within MPMX20_02919 at 3055.881 kb on - strand, within MPMX20_02919 at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.945 kb on + strand at 3055.967 kb on - strand at 3056.024 kb on + strand at 3056.047 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.159 kb on - strand, within MPMX20_02920 at 3056.240 kb on + strand, within MPMX20_02920 at 3056.303 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.487 kb on - strand, within MPMX20_02920 at 3056.499 kb on + strand, within MPMX20_02920 at 3056.522 kb on + strand, within MPMX20_02920 at 3056.530 kb on - strand, within MPMX20_02920 at 3056.695 kb on - strand, within MPMX20_02920 at 3056.860 kb on - strand, within MPMX20_02920 at 3056.901 kb on + strand at 3056.901 kb on + strand at 3056.909 kb on - strand at 3056.926 kb on - strand at 3056.930 kb on + strand at 3056.993 kb on + strand at 3057.027 kb on + strand, within MPMX20_02921 at 3057.027 kb on + strand, within MPMX20_02921 at 3057.027 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.032 kb on + strand, within MPMX20_02921 at 3057.035 kb on - strand, within MPMX20_02921 at 3057.035 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.040 kb on - strand, within MPMX20_02921 at 3057.126 kb on + strand, within MPMX20_02921 at 3057.129 kb on - strand, within MPMX20_02921 at 3057.158 kb on - strand, within MPMX20_02921 at 3057.161 kb on + strand, within MPMX20_02921 at 3057.220 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.235 kb on + strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.239 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.243 kb on - strand, within MPMX20_02921 at 3057.250 kb on - strand at 3057.250 kb on - strand at 3057.257 kb on - strand at 3057.260 kb on - strand at 3057.360 kb on - strand at 3057.372 kb on - strand at 3057.374 kb on + strand at 3057.374 kb on - strand at 3057.450 kb on + strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.458 kb on - strand, within MPMX20_02922 at 3057.571 kb on - strand, within MPMX20_02922 at 3057.621 kb on - strand, within MPMX20_02922 at 3057.677 kb on - strand, within MPMX20_02922 at 3057.681 kb on + strand, within MPMX20_02922 at 3057.747 kb on - strand, within MPMX20_02922 at 3057.834 kb on + strand, within MPMX20_02922 at 3057.842 kb on - strand, within MPMX20_02922 at 3057.845 kb on + strand, within MPMX20_02922 at 3057.853 kb on - strand, within MPMX20_02922 at 3057.858 kb on + strand, within MPMX20_02922 at 3057.889 kb on - strand, within MPMX20_02922 at 3057.921 kb on - strand, within MPMX20_02922 at 3057.970 kb on - strand, within MPMX20_02922
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB remove 3,055,012 + -1.0 3,055,012 + -0.2 3,055,012 + -1.2 3,055,012 + -0.9 3,055,012 + -1.9 3,055,012 + +2.2 3,055,020 - -1.6 3,055,020 - -0.7 3,055,020 - -1.1 3,055,039 + -1.0 3,055,054 + -0.7 3,055,095 + -0.4 3,055,095 + -1.7 3,055,102 + -1.0 3,055,103 - -1.3 3,055,127 + -0.7 3,055,161 + -0.8 3,055,169 - -0.9 3,055,265 + -1.6 3,055,265 + -1.6 3,055,265 + -1.2 3,055,265 + -1.2 3,055,265 + +0.0 3,055,273 - -1.5 3,055,273 - -1.2 3,055,273 - -2.0 3,055,276 + -1.5 3,055,398 + MPMX20_02917 0.65 -2.3 3,055,398 + MPMX20_02917 0.65 -0.3 3,055,399 + MPMX20_02917 0.65 -0.6 3,055,416 - MPMX20_02917 0.77 -0.1 3,055,437 - -0.0 3,055,445 + -1.9 3,055,445 + -0.7 3,055,445 + -0.6 3,055,445 + -1.0 3,055,453 - -1.2 3,055,453 - -1.3 3,055,453 - -0.3 3,055,481 - -0.4 3,055,524 - -0.6 3,055,542 + -2.4 3,055,566 + -2.3 3,055,631 + MPMX20_02918 0.13 -1.0 3,055,638 - MPMX20_02918 0.19 -1.4 3,055,706 + MPMX20_02918 0.71 -1.0 3,055,714 - MPMX20_02918 0.78 -1.3 3,055,714 - MPMX20_02918 0.78 -1.5 3,055,714 - MPMX20_02918 0.78 -1.1 3,055,714 - MPMX20_02918 0.78 -0.5 3,055,731 + -0.6 3,055,732 + -0.5 3,055,762 + MPMX20_02919 0.10 -2.2 3,055,766 - MPMX20_02919 0.12 -1.4 3,055,770 - MPMX20_02919 0.14 -0.7 3,055,770 - MPMX20_02919 0.14 -1.9 3,055,780 + MPMX20_02919 0.19 -1.4 3,055,780 + MPMX20_02919 0.19 -2.5 3,055,814 + MPMX20_02919 0.36 -1.0 3,055,853 + MPMX20_02919 0.56 -1.7 3,055,856 - MPMX20_02919 0.58 -1.6 3,055,868 + MPMX20_02919 0.64 -2.1 3,055,868 + MPMX20_02919 0.64 -1.3 3,055,876 - MPMX20_02919 0.68 -0.4 3,055,881 - MPMX20_02919 0.70 -0.6 3,055,933 + +1.3 3,055,933 + -1.0 3,055,933 + -0.6 3,055,941 - -0.7 3,055,941 - -3.4 3,055,941 - -0.9 3,055,941 - -1.1 3,055,941 - +0.3 3,055,941 - -1.3 3,055,941 - -0.2 3,055,945 + -0.9 3,055,967 - +0.3 3,056,024 + -3.6 3,056,047 + -0.7 3,056,083 + -1.7 3,056,083 + -2.5 3,056,083 + -0.1 3,056,159 - MPMX20_02920 0.15 -0.0 3,056,240 + MPMX20_02920 0.24 -1.5 3,056,303 + MPMX20_02920 0.30 +2.2 3,056,438 + MPMX20_02920 0.44 -1.8 3,056,438 + MPMX20_02920 0.44 -0.4 3,056,438 + MPMX20_02920 0.44 -0.9 3,056,438 + MPMX20_02920 0.44 -2.1 3,056,438 + MPMX20_02920 0.44 -1.4 3,056,446 - MPMX20_02920 0.45 -0.8 3,056,446 - MPMX20_02920 0.45 -0.7 3,056,446 - MPMX20_02920 0.45 -2.7 3,056,446 - MPMX20_02920 0.45 -1.5 3,056,487 - MPMX20_02920 0.49 -0.2 3,056,499 + MPMX20_02920 0.50 -1.3 3,056,522 + MPMX20_02920 0.53 -1.8 3,056,530 - MPMX20_02920 0.53 -0.2 3,056,695 - MPMX20_02920 0.70 -0.1 3,056,860 - MPMX20_02920 0.87 -1.0 3,056,901 + -0.6 3,056,901 + -0.3 3,056,909 - -1.3 3,056,926 - -0.8 3,056,930 + -1.6 3,056,993 + -1.5 3,057,027 + MPMX20_02921 0.13 -0.9 3,057,027 + MPMX20_02921 0.13 -1.9 3,057,027 + MPMX20_02921 0.13 -0.6 3,057,032 + MPMX20_02921 0.15 -0.3 3,057,032 + MPMX20_02921 0.15 -0.4 3,057,032 + MPMX20_02921 0.15 +0.1 3,057,032 + MPMX20_02921 0.15 -0.8 3,057,032 + MPMX20_02921 0.15 -0.8 3,057,032 + MPMX20_02921 0.15 -0.7 3,057,032 + MPMX20_02921 0.15 +1.2 3,057,032 + MPMX20_02921 0.15 -1.5 3,057,032 + MPMX20_02921 0.15 -0.4 3,057,035 - MPMX20_02921 0.16 +0.3 3,057,035 - MPMX20_02921 0.16 +0.1 3,057,040 - MPMX20_02921 0.18 -0.5 3,057,040 - MPMX20_02921 0.18 -0.0 3,057,040 - MPMX20_02921 0.18 -1.3 3,057,040 - MPMX20_02921 0.18 -0.5 3,057,040 - MPMX20_02921 0.18 -0.2 3,057,126 + MPMX20_02921 0.48 -0.6 3,057,129 - MPMX20_02921 0.49 -0.1 3,057,158 - MPMX20_02921 0.59 -0.6 3,057,161 + MPMX20_02921 0.60 -1.0 3,057,220 + MPMX20_02921 0.81 -1.6 3,057,235 + MPMX20_02921 0.86 -0.1 3,057,235 + MPMX20_02921 0.86 -0.3 3,057,235 + MPMX20_02921 0.86 -2.2 3,057,235 + MPMX20_02921 0.86 -0.9 3,057,239 - MPMX20_02921 0.88 -1.3 3,057,239 - MPMX20_02921 0.88 -1.0 3,057,243 - MPMX20_02921 0.89 -1.6 3,057,243 - MPMX20_02921 0.89 -0.8 3,057,250 - -0.0 3,057,250 - -0.4 3,057,257 - -0.7 3,057,260 - -0.3 3,057,360 - -0.4 3,057,372 - -0.2 3,057,374 + -0.2 3,057,374 - -0.5 3,057,450 + MPMX20_02922 0.19 -0.6 3,057,458 - MPMX20_02922 0.20 +0.0 3,057,458 - MPMX20_02922 0.20 -0.5 3,057,571 - MPMX20_02922 0.33 -0.6 3,057,621 - MPMX20_02922 0.39 -1.4 3,057,677 - MPMX20_02922 0.46 +0.3 3,057,681 + MPMX20_02922 0.46 -0.5 3,057,747 - MPMX20_02922 0.54 -0.2 3,057,834 + MPMX20_02922 0.64 -2.9 3,057,842 - MPMX20_02922 0.65 +0.6 3,057,845 + MPMX20_02922 0.65 +0.6 3,057,853 - MPMX20_02922 0.66 +0.3 3,057,858 + MPMX20_02922 0.67 -0.6 3,057,889 - MPMX20_02922 0.71 -0.7 3,057,921 - MPMX20_02922 0.74 -0.0 3,057,970 - MPMX20_02922 0.80 -0.9
Or see this region's nucleotide sequence