Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06560

Experiment: Aerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aerobic, pH5.5
1,425,751	+				-1.6
1,425,751	+				-2.8
1,425,751	+				-3.6
1,425,751	+				-2.6
1,425,751	+				-3.0
1,425,751	+				-3.0
1,425,751	+				-2.3
1,425,751	+				-3.1
1,425,751	+				-4.2
1,425,752	-				-3.6
1,425,752	-				-2.4
1,425,752	-				-2.6
1,425,752	-				-4.0
1,425,752	-				-2.5
1,425,752	-				-3.2
1,425,752	-				-2.5
1,425,888	-		ABCV34_RS06560	0.34	-1.6
1,425,923	+		ABCV34_RS06560	0.46	-3.2
1,425,923	+		ABCV34_RS06560	0.46	-3.1
1,425,923	+		ABCV34_RS06560	0.46	-3.0
1,425,924	-		ABCV34_RS06560	0.47	-3.0
1,425,924	-		ABCV34_RS06560	0.47	-2.6
1,425,924	-		ABCV34_RS06560	0.47	-2.8
1,425,924	-		ABCV34_RS06560	0.47	-2.3
1,425,924	-		ABCV34_RS06560	0.47	-1.9
1,425,924	-		ABCV34_RS06560	0.47	-2.8
1,425,924	-		ABCV34_RS06560	0.47	-1.9
1,425,924	-		ABCV34_RS06560	0.47	-2.3
1,425,944	+		ABCV34_RS06560	0.53	-2.2
1,425,944	+		ABCV34_RS06560	0.53	-2.0
1,425,945	-		ABCV34_RS06560	0.54	-1.7
1,425,945	-		ABCV34_RS06560	0.54	-3.1
1,425,971	+		ABCV34_RS06560	0.63	-3.5
1,425,972	-		ABCV34_RS06560	0.63	-2.2
1,425,972	-		ABCV34_RS06560	0.63	-2.2
1,425,972	-		ABCV34_RS06560	0.63	-2.6
1,425,972	-		ABCV34_RS06560	0.63	-3.2
1,425,992	+		ABCV34_RS06560	0.70	-2.8
1,425,992	+		ABCV34_RS06560	0.70	-2.6
1,425,992	+		ABCV34_RS06560	0.70	-2.4
1,425,992	+		ABCV34_RS06560	0.70	-3.1
1,425,992	+		ABCV34_RS06560	0.70	-2.7
1,425,992	+		ABCV34_RS06560	0.70	-2.8
1,425,992	+		ABCV34_RS06560	0.70	-2.7
1,425,993	-		ABCV34_RS06560	0.70	-2.9
1,425,993	-		ABCV34_RS06560	0.70	-2.4
1,425,993	-		ABCV34_RS06560	0.70	-2.2
1,425,993	-		ABCV34_RS06560	0.70	-2.4
1,425,993	-		ABCV34_RS06560	0.70	-1.7
1,425,993	-		ABCV34_RS06560	0.70	-2.7
1,426,016	+		ABCV34_RS06560	0.78	-2.6
1,426,017	-		ABCV34_RS06560	0.78	-2.6
1,426,017	-		ABCV34_RS06560	0.78	-2.2
1,426,017	-		ABCV34_RS06560	0.78	-3.2
1,426,017	-		ABCV34_RS06560	0.78	-2.1
1,426,095	+				-2.0
1,426,095	+				-2.6
1,426,095	+				-2.8
1,426,095	+				-2.3
1,426,095	+				-2.9
1,426,095	+				-2.9
1,426,095	+				-2.9
1,426,095	+				-2.4
1,426,095	+				-2.3
1,426,096	-				-1.9
1,426,096	-				-2.1
1,426,096	-				-2.7
1,426,096	-				-2.8
1,426,096	-				-3.2
1,426,096	-				-2.4
1,426,096	-				-1.7
1,426,096	-				-3.3
1,426,131	+				-1.8
1,426,131	+				-3.7
1,426,131	+				-2.8
1,426,158	-				-2.6
1,426,158	-				-2.3
1,426,158	-				-2.1
1,426,158	-				-1.8
1,426,158	-				-1.7
1,426,202	+				-2.5
1,426,239	+				-1.8
1,426,239	+				-1.9
1,426,239	+				-2.5
1,426,239	+				-1.0
1,426,239	+				-3.7
1,426,240	-				-3.0
1,426,240	-				-1.9
1,426,342	+				-3.2
1,426,342	+				-2.9
1,426,343	-				-1.9
1,426,343	-				-2.3
1,426,360	+				-1.9
1,426,361	-				-2.4
1,426,361	-				-2.0
1,426,361	-				-2.1
1,426,361	-				-4.0
1,426,361	-				-2.4
1,426,361	-				-2.5
1,426,361	-				-1.6
1,426,361	-				-2.7
1,426,382	-				-1.2
1,426,382	-				-2.8
1,426,444	+				-2.3
1,426,444	+				-4.3
1,426,445	-				-1.6
1,426,445	-				-2.6
1,426,445	-				-3.0
1,426,497	-				-2.7
1,426,497	-				-3.2
1,426,497	-				-3.5
1,426,514	+				-2.8
1,426,514	+				-2.6
1,426,514	+				-2.9
1,426,514	+				-2.2
1,426,515	-				-2.8
1,426,515	-				-2.5
1,426,515	-				-1.0
1,426,515	-				-1.9
1,426,515	-				-2.6
1,426,624	+				-2.4
1,426,624	+				-1.1
1,426,624	+				-2.2
1,426,624	+				-2.3
1,426,624	+				-2.7
1,426,624	+				-2.5
1,426,624	+				-2.4
1,426,624	+				-2.5
1,426,624	+				-2.5
1,426,624	+				-2.1
1,426,624	+				-2.1
1,426,624	+				-2.7
1,426,624	+				-2.9
1,426,625	-				-2.0
1,426,625	-				-2.3
1,426,625	-				-3.7
1,426,625	-				-2.0
1,426,625	-				-3.3
1,426,625	-				-2.8
1,426,625	-				-3.3
1,426,625	-				-2.4
1,426,625	-				+0.0
1,426,626	+				-2.8
1,426,626	+				-2.2
1,426,626	+				-1.9
1,426,626	+				-2.7
1,426,626	+				-2.3
1,426,626	+				-3.0
1,426,626	+				-2.0
1,426,626	+				-2.6
1,426,627	-				-2.3
1,426,627	-				-1.6
1,426,627	-				-1.6
1,426,627	-				-1.2
1,426,627	-				-2.0
1,426,654	-				-2.5
1,426,684	-				+0.0
1,426,695	+				-2.5
1,426,695	+				-2.5
1,426,695	+				-2.7
1,426,695	+				-3.4
1,426,695	+				-2.4
1,426,695	+				-2.3
1,426,695	+				-2.4
1,426,695	+				-3.2
1,426,695	+				-2.9
1,426,695	+				-3.3
1,426,695	+				-1.6
1,426,695	+				-3.0
1,426,695	+				-2.2
1,426,695	+				-3.4
1,426,695	+				-2.6
1,426,696	-				-2.4
1,426,696	-				-2.6
1,426,696	-				-3.2
1,426,696	-				-5.0
1,426,700	+				-1.2
1,426,700	+				-2.5
1,426,700	+				-2.4
1,426,701	-				-1.9
1,426,701	-				-2.0
1,426,701	-				-3.0
1,426,935	+		ABCV34_RS06565	0.25	-2.3
1,426,935	+		ABCV34_RS06565	0.25	-2.0
1,426,935	+		ABCV34_RS06565	0.25	-2.0
1,426,935	+		ABCV34_RS06565	0.25	-2.4
1,426,936	-		ABCV34_RS06565	0.25	-2.8
1,426,936	-		ABCV34_RS06565	0.25	-1.1
1,426,953	+		ABCV34_RS06565	0.34	-2.8
1,426,953	+		ABCV34_RS06565	0.34	-3.0
1,426,953	+		ABCV34_RS06565	0.34	-2.7
1,426,953	+		ABCV34_RS06565	0.34	-2.9
1,426,954	-		ABCV34_RS06565	0.35	-2.8
1,426,954	-		ABCV34_RS06565	0.35	-2.3
1,426,956	+		ABCV34_RS06565	0.36	-1.7
1,426,956	+		ABCV34_RS06565	0.36	-1.6
1,426,956	+		ABCV34_RS06565	0.36	-3.1
1,426,957	-		ABCV34_RS06565	0.37	-2.8
1,427,041	+		ABCV34_RS06565	0.82	-2.1
1,427,041	+		ABCV34_RS06565	0.82	-2.2
1,427,041	+		ABCV34_RS06565	0.82	-3.6
1,427,041	+		ABCV34_RS06565	0.82	-1.8
1,427,041	+		ABCV34_RS06565	0.82	-3.2
1,427,041	+		ABCV34_RS06565	0.82	-2.0
1,427,042	-		ABCV34_RS06565	0.82	-1.6
1,427,042	-		ABCV34_RS06565	0.82	-2.9
1,427,069	-				-2.4
1,427,072	+				-2.0
1,427,072	+				-2.1
1,427,072	+				-2.2
1,427,072	+				-1.2
1,427,072	+				-2.6
1,427,073	-				-1.7
1,427,073	-				-2.3
1,427,073	-				-2.1
1,427,073	-				-2.4
1,427,073	-				-2.5
1,427,073	-				-0.7