Experiment: mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04515 and MPMX20_04516 are separated by 41 nucleotides MPMX20_04516 and MPMX20_04517 are separated by 9 nucleotides MPMX20_04517 and MPMX20_04518 are separated by 196 nucleotides
MPMX20_04515: MPMX20_04515 - tRNA/tmRNA (uracil-C(5))-methyltransferase, at 4,723,189 to 4,724,289
_04515
MPMX20_04516: MPMX20_04516 - Inner membrane protein YijD, at 4,724,331 to 4,724,690
_04516
MPMX20_04517: MPMX20_04517 - HTH-type transcriptional repressor FabR, at 4,724,700 to 4,725,338
_04517
MPMX20_04518: MPMX20_04518 - Soluble pyridine nucleotide transhydrogenase, at 4,725,535 to 4,726,935
_04518
Position (kb)
4724
4725
4726 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4723.738 kb on + strand, within MPMX20_04515 at 4723.746 kb on - strand, within MPMX20_04515 at 4723.756 kb on - strand, within MPMX20_04515 at 4723.756 kb on - strand, within MPMX20_04515 at 4723.756 kb on - strand, within MPMX20_04515 at 4723.756 kb on - strand, within MPMX20_04515 at 4723.756 kb on - strand, within MPMX20_04515 at 4723.807 kb on + strand, within MPMX20_04515 at 4723.807 kb on + strand, within MPMX20_04515 at 4723.814 kb on + strand, within MPMX20_04515 at 4723.815 kb on + strand, within MPMX20_04515 at 4723.834 kb on + strand, within MPMX20_04515 at 4723.925 kb on + strand, within MPMX20_04515 at 4723.933 kb on - strand, within MPMX20_04515 at 4723.935 kb on + strand, within MPMX20_04515 at 4723.943 kb on - strand, within MPMX20_04515 at 4723.943 kb on - strand, within MPMX20_04515 at 4723.983 kb on - strand, within MPMX20_04515 at 4723.985 kb on + strand, within MPMX20_04515 at 4723.993 kb on - strand, within MPMX20_04515 at 4723.995 kb on - strand, within MPMX20_04515 at 4724.004 kb on + strand, within MPMX20_04515 at 4724.015 kb on + strand, within MPMX20_04515 at 4724.015 kb on + strand, within MPMX20_04515 at 4724.023 kb on - strand, within MPMX20_04515 at 4724.023 kb on - strand, within MPMX20_04515 at 4724.033 kb on + strand, within MPMX20_04515 at 4724.055 kb on - strand, within MPMX20_04515 at 4724.064 kb on - strand, within MPMX20_04515 at 4724.098 kb on + strand, within MPMX20_04515 at 4724.098 kb on + strand, within MPMX20_04515 at 4724.106 kb on - strand, within MPMX20_04515 at 4724.106 kb on - strand, within MPMX20_04515 at 4724.106 kb on - strand, within MPMX20_04515 at 4724.106 kb on - strand, within MPMX20_04515 at 4724.133 kb on - strand, within MPMX20_04515 at 4724.200 kb on - strand at 4724.218 kb on - strand at 4724.220 kb on - strand at 4724.267 kb on + strand at 4724.267 kb on + strand at 4724.290 kb on + strand at 4724.303 kb on + strand at 4724.328 kb on + strand at 4724.369 kb on + strand, within MPMX20_04516 at 4724.369 kb on + strand, within MPMX20_04516 at 4724.422 kb on - strand, within MPMX20_04516 at 4724.444 kb on - strand, within MPMX20_04516 at 4724.452 kb on + strand, within MPMX20_04516 at 4724.452 kb on + strand, within MPMX20_04516 at 4724.452 kb on + strand, within MPMX20_04516 at 4724.452 kb on + strand, within MPMX20_04516 at 4724.452 kb on + strand, within MPMX20_04516 at 4724.453 kb on - strand, within MPMX20_04516 at 4724.455 kb on - strand, within MPMX20_04516 at 4724.465 kb on - strand, within MPMX20_04516 at 4724.482 kb on - strand, within MPMX20_04516 at 4724.482 kb on - strand, within MPMX20_04516 at 4724.494 kb on + strand, within MPMX20_04516 at 4724.527 kb on + strand, within MPMX20_04516 at 4724.527 kb on + strand, within MPMX20_04516 at 4724.537 kb on + strand, within MPMX20_04516 at 4724.537 kb on + strand, within MPMX20_04516 at 4724.545 kb on - strand, within MPMX20_04516 at 4724.547 kb on + strand, within MPMX20_04516 at 4724.550 kb on - strand, within MPMX20_04516 at 4724.553 kb on - strand, within MPMX20_04516 at 4724.554 kb on + strand, within MPMX20_04516 at 4724.562 kb on - strand, within MPMX20_04516 at 4724.659 kb on + strand at 4724.660 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.667 kb on - strand at 4724.670 kb on + strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.678 kb on - strand at 4724.690 kb on + strand at 4724.705 kb on - strand at 4724.751 kb on - strand at 4724.758 kb on + strand at 4724.758 kb on + strand at 4724.770 kb on + strand, within MPMX20_04517 at 4724.778 kb on - strand, within MPMX20_04517 at 4724.877 kb on - strand, within MPMX20_04517 at 4724.877 kb on - strand, within MPMX20_04517 at 4724.896 kb on + strand, within MPMX20_04517 at 4725.067 kb on - strand, within MPMX20_04517 at 4725.067 kb on - strand, within MPMX20_04517 at 4725.136 kb on - strand, within MPMX20_04517 at 4725.141 kb on + strand, within MPMX20_04517 at 4725.149 kb on - strand, within MPMX20_04517 at 4725.154 kb on + strand, within MPMX20_04517 at 4725.156 kb on - strand, within MPMX20_04517 at 4725.162 kb on - strand, within MPMX20_04517 at 4725.234 kb on - strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.270 kb on - strand, within MPMX20_04517 at 4725.359 kb on + strand at 4725.367 kb on - strand at 4725.438 kb on - strand at 4725.527 kb on + strand at 4725.535 kb on - strand at 4725.592 kb on + strand at 4725.626 kb on + strand at 4725.647 kb on + strand at 4725.665 kb on + strand at 4725.759 kb on + strand, within MPMX20_04518 at 4725.842 kb on + strand, within MPMX20_04518 at 4725.850 kb on - strand, within MPMX20_04518 at 4725.852 kb on + strand, within MPMX20_04518 at 4725.876 kb on + strand, within MPMX20_04518 at 4725.895 kb on + strand, within MPMX20_04518 at 4725.982 kb on - strand, within MPMX20_04518 at 4726.007 kb on + strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.154 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518
Per-strain Table
Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB remove 4,723,738 + MPMX20_04515 0.50 -2.6 4,723,746 - MPMX20_04515 0.51 +2.1 4,723,756 - MPMX20_04515 0.51 -0.1 4,723,756 - MPMX20_04515 0.51 -0.4 4,723,756 - MPMX20_04515 0.51 +0.8 4,723,756 - MPMX20_04515 0.51 -0.1 4,723,756 - MPMX20_04515 0.51 -0.3 4,723,807 + MPMX20_04515 0.56 +1.0 4,723,807 + MPMX20_04515 0.56 -0.7 4,723,814 + MPMX20_04515 0.57 -0.3 4,723,815 + MPMX20_04515 0.57 +0.9 4,723,834 + MPMX20_04515 0.59 -0.6 4,723,925 + MPMX20_04515 0.67 -0.7 4,723,933 - MPMX20_04515 0.68 -1.5 4,723,935 + MPMX20_04515 0.68 +0.2 4,723,943 - MPMX20_04515 0.68 +0.2 4,723,943 - MPMX20_04515 0.68 +0.3 4,723,983 - MPMX20_04515 0.72 -0.5 4,723,985 + MPMX20_04515 0.72 -0.2 4,723,993 - MPMX20_04515 0.73 -0.4 4,723,995 - MPMX20_04515 0.73 +0.6 4,724,004 + MPMX20_04515 0.74 -0.3 4,724,015 + MPMX20_04515 0.75 -1.6 4,724,015 + MPMX20_04515 0.75 +0.3 4,724,023 - MPMX20_04515 0.76 -0.5 4,724,023 - MPMX20_04515 0.76 +0.2 4,724,033 + MPMX20_04515 0.77 -0.1 4,724,055 - MPMX20_04515 0.79 -0.3 4,724,064 - MPMX20_04515 0.79 -2.2 4,724,098 + MPMX20_04515 0.83 -1.8 4,724,098 + MPMX20_04515 0.83 -0.3 4,724,106 - MPMX20_04515 0.83 +1.2 4,724,106 - MPMX20_04515 0.83 -0.6 4,724,106 - MPMX20_04515 0.83 -0.1 4,724,106 - MPMX20_04515 0.83 -0.6 4,724,133 - MPMX20_04515 0.86 +0.7 4,724,200 - +0.3 4,724,218 - +0.2 4,724,220 - -0.3 4,724,267 + +0.3 4,724,267 + -0.1 4,724,290 + -1.8 4,724,303 + +0.1 4,724,328 + +0.4 4,724,369 + MPMX20_04516 0.11 -0.5 4,724,369 + MPMX20_04516 0.11 -0.3 4,724,422 - MPMX20_04516 0.25 +1.3 4,724,444 - MPMX20_04516 0.31 -0.3 4,724,452 + MPMX20_04516 0.34 +1.0 4,724,452 + MPMX20_04516 0.34 -0.0 4,724,452 + MPMX20_04516 0.34 -0.4 4,724,452 + MPMX20_04516 0.34 +0.0 4,724,452 + MPMX20_04516 0.34 +0.9 4,724,453 - MPMX20_04516 0.34 +0.7 4,724,455 - MPMX20_04516 0.34 +0.1 4,724,465 - MPMX20_04516 0.37 -0.6 4,724,482 - MPMX20_04516 0.42 -0.9 4,724,482 - MPMX20_04516 0.42 +0.7 4,724,494 + MPMX20_04516 0.45 -0.3 4,724,527 + MPMX20_04516 0.54 -0.7 4,724,527 + MPMX20_04516 0.54 -1.0 4,724,537 + MPMX20_04516 0.57 +1.0 4,724,537 + MPMX20_04516 0.57 +0.5 4,724,545 - MPMX20_04516 0.59 +0.2 4,724,547 + MPMX20_04516 0.60 -0.6 4,724,550 - MPMX20_04516 0.61 -0.3 4,724,553 - MPMX20_04516 0.62 +0.4 4,724,554 + MPMX20_04516 0.62 -2.6 4,724,562 - MPMX20_04516 0.64 -0.3 4,724,659 + -0.9 4,724,660 + -1.1 4,724,665 + -0.5 4,724,665 + -0.5 4,724,665 + +0.7 4,724,665 + -0.4 4,724,665 + +0.4 4,724,665 + +0.3 4,724,665 + +0.2 4,724,667 - +0.3 4,724,670 + -1.0 4,724,673 - +0.4 4,724,673 - -0.9 4,724,673 - -1.9 4,724,673 - +0.2 4,724,673 - -0.4 4,724,673 - +0.1 4,724,673 - -0.1 4,724,673 - -0.5 4,724,673 - +0.2 4,724,678 - +1.0 4,724,690 + -0.0 4,724,705 - -0.7 4,724,751 - -0.1 4,724,758 + +0.8 4,724,758 + -0.8 4,724,770 + MPMX20_04517 0.11 -0.4 4,724,778 - MPMX20_04517 0.12 -1.5 4,724,877 - MPMX20_04517 0.28 +1.0 4,724,877 - MPMX20_04517 0.28 +0.2 4,724,896 + MPMX20_04517 0.31 -0.2 4,725,067 - MPMX20_04517 0.57 -2.2 4,725,067 - MPMX20_04517 0.57 -1.4 4,725,136 - MPMX20_04517 0.68 +0.7 4,725,141 + MPMX20_04517 0.69 +0.8 4,725,149 - MPMX20_04517 0.70 +0.2 4,725,154 + MPMX20_04517 0.71 -1.3 4,725,156 - MPMX20_04517 0.71 -0.8 4,725,162 - MPMX20_04517 0.72 -2.1 4,725,234 - MPMX20_04517 0.84 -1.3 4,725,236 + MPMX20_04517 0.84 -1.3 4,725,236 + MPMX20_04517 0.84 -1.0 4,725,236 + MPMX20_04517 0.84 -2.7 4,725,236 + MPMX20_04517 0.84 -1.9 4,725,236 + MPMX20_04517 0.84 -2.6 4,725,236 + MPMX20_04517 0.84 -0.3 4,725,236 + MPMX20_04517 0.84 -0.5 4,725,236 + MPMX20_04517 0.84 +0.8 4,725,244 - MPMX20_04517 0.85 -0.9 4,725,244 - MPMX20_04517 0.85 -2.3 4,725,244 - MPMX20_04517 0.85 -1.6 4,725,244 - MPMX20_04517 0.85 -1.6 4,725,244 - MPMX20_04517 0.85 -1.1 4,725,262 + MPMX20_04517 0.88 -0.2 4,725,262 + MPMX20_04517 0.88 +0.1 4,725,262 + MPMX20_04517 0.88 +0.4 4,725,270 - MPMX20_04517 0.89 -1.9 4,725,359 + +0.4 4,725,367 - -1.0 4,725,438 - +0.2 4,725,527 + -0.5 4,725,535 - -0.4 4,725,592 + -0.5 4,725,626 + -2.6 4,725,647 + +0.2 4,725,665 + -0.3 4,725,759 + MPMX20_04518 0.16 -2.9 4,725,842 + MPMX20_04518 0.22 -2.3 4,725,850 - MPMX20_04518 0.22 -0.8 4,725,852 + MPMX20_04518 0.23 -1.0 4,725,876 + MPMX20_04518 0.24 +1.8 4,725,895 + MPMX20_04518 0.26 -0.6 4,725,982 - MPMX20_04518 0.32 -2.2 4,726,007 + MPMX20_04518 0.34 -2.7 4,726,015 - MPMX20_04518 0.34 -0.4 4,726,015 - MPMX20_04518 0.34 +1.8 4,726,154 - MPMX20_04518 0.44 -2.1 4,726,198 - MPMX20_04518 0.47 -1.5 4,726,198 - MPMX20_04518 0.47 -0.7
Or see this region's nucleotide sequence