Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00020

Experiment: mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00019 and MPMX20_00020 overlap by 4 nucleotidesMPMX20_00020 and MPMX20_00021 are separated by 91 nucleotidesMPMX20_00021 and MPMX20_00022 overlap by 11 nucleotidesMPMX20_00022 and MPMX20_00023 overlap by 17 nucleotides MPMX20_00019: MPMX20_00019 - hypothetical protein, at 19,804 to 21,426 _00019 MPMX20_00020: MPMX20_00020 - 6-phospho-alpha-glucosidase, at 21,423 to 22,745 _00020 MPMX20_00021: MPMX20_00021 - Inner membrane protein YidH, at 22,837 to 23,184 _00021 MPMX20_00022: MPMX20_00022 - Inner membrane protein YidG, at 23,174 to 23,521 _00022 MPMX20_00023: MPMX20_00023 - D-serine dehydratase, at 23,505 to 24,797 _00023 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 20.454 kb on + strand, within MPMX20_00019at 20.455 kb on + strand, within MPMX20_00019at 20.463 kb on - strand, within MPMX20_00019at 20.463 kb on - strand, within MPMX20_00019at 20.523 kb on - strand, within MPMX20_00019at 20.547 kb on - strand, within MPMX20_00019at 20.650 kb on + strand, within MPMX20_00019at 20.656 kb on + strand, within MPMX20_00019at 20.656 kb on + strand, within MPMX20_00019at 20.749 kb on - strand, within MPMX20_00019at 20.974 kb on + strand, within MPMX20_00019at 20.981 kb on + strand, within MPMX20_00019at 21.003 kb on - strand, within MPMX20_00019at 21.012 kb on + strand, within MPMX20_00019at 21.031 kb on + strand, within MPMX20_00019at 21.047 kb on - strand, within MPMX20_00019at 21.047 kb on - strand, within MPMX20_00019at 21.047 kb on - strand, within MPMX20_00019at 21.152 kb on - strand, within MPMX20_00019at 21.277 kb on + strandat 21.293 kb on + strandat 21.301 kb on - strandat 21.334 kb on - strandat 21.341 kb on + strandat 21.341 kb on + strandat 21.349 kb on - strandat 21.368 kb on - strandat 21.463 kb on + strandat 21.552 kb on + strandat 21.552 kb on + strandat 21.552 kb on + strandat 21.554 kb on + strandat 21.560 kb on - strand, within MPMX20_00020at 21.560 kb on - strand, within MPMX20_00020at 21.560 kb on - strand, within MPMX20_00020at 21.565 kb on + strand, within MPMX20_00020at 21.573 kb on - strand, within MPMX20_00020at 21.586 kb on + strand, within MPMX20_00020at 21.594 kb on - strand, within MPMX20_00020at 21.631 kb on + strand, within MPMX20_00020at 21.632 kb on + strand, within MPMX20_00020at 21.642 kb on + strand, within MPMX20_00020at 21.642 kb on + strand, within MPMX20_00020at 21.650 kb on - strand, within MPMX20_00020at 21.665 kb on - strand, within MPMX20_00020at 21.669 kb on + strand, within MPMX20_00020at 21.677 kb on - strand, within MPMX20_00020at 21.677 kb on - strand, within MPMX20_00020at 21.694 kb on - strand, within MPMX20_00020at 21.733 kb on - strand, within MPMX20_00020at 21.735 kb on + strand, within MPMX20_00020at 21.735 kb on + strand, within MPMX20_00020at 21.822 kb on + strand, within MPMX20_00020at 21.830 kb on - strand, within MPMX20_00020at 21.841 kb on + strand, within MPMX20_00020at 21.856 kb on + strand, within MPMX20_00020at 21.864 kb on - strand, within MPMX20_00020at 21.865 kb on - strand, within MPMX20_00020at 21.973 kb on + strand, within MPMX20_00020at 21.981 kb on - strand, within MPMX20_00020at 21.981 kb on - strand, within MPMX20_00020at 21.990 kb on - strand, within MPMX20_00020at 22.006 kb on + strand, within MPMX20_00020at 22.185 kb on + strand, within MPMX20_00020at 22.250 kb on + strand, within MPMX20_00020at 22.302 kb on + strand, within MPMX20_00020at 22.307 kb on + strand, within MPMX20_00020at 22.307 kb on + strand, within MPMX20_00020at 22.315 kb on - strand, within MPMX20_00020at 22.366 kb on - strand, within MPMX20_00020at 22.418 kb on - strand, within MPMX20_00020at 22.461 kb on + strand, within MPMX20_00020at 22.527 kb on - strand, within MPMX20_00020at 22.527 kb on - strand, within MPMX20_00020at 22.536 kb on - strand, within MPMX20_00020at 22.545 kb on + strand, within MPMX20_00020at 22.571 kb on - strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.609 kb on + strand, within MPMX20_00020at 22.653 kb on - strandat 22.655 kb on + strandat 22.655 kb on + strandat 22.655 kb on + strandat 22.663 kb on - strandat 22.724 kb on + strandat 22.724 kb on + strandat 22.737 kb on - strandat 22.811 kb on - strandat 22.861 kb on + strandat 22.919 kb on - strand, within MPMX20_00021at 22.929 kb on - strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.942 kb on + strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.950 kb on - strand, within MPMX20_00021at 22.957 kb on - strand, within MPMX20_00021at 22.989 kb on - strand, within MPMX20_00021at 22.989 kb on - strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 22.996 kb on + strand, within MPMX20_00021at 23.004 kb on - strand, within MPMX20_00021at 23.169 kb on + strandat 23.234 kb on + strand, within MPMX20_00022at 23.320 kb on - strand, within MPMX20_00022at 23.430 kb on - strand, within MPMX20_00022at 23.430 kb on - strand, within MPMX20_00022at 23.501 kb on - strandat 23.538 kb on - strandat 23.572 kb on - strandat 23.574 kb on + strandat 23.574 kb on + strandat 23.583 kb on + strandat 23.713 kb on + strand, within MPMX20_00023at 23.713 kb on + strand, within MPMX20_00023

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Per-strain Table

Position Strand Gene LocusTag Fraction mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB
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20,454 + MPMX20_00019 0.40 -0.2
20,455 + MPMX20_00019 0.40 -1.3
20,463 - MPMX20_00019 0.41 -0.1
20,463 - MPMX20_00019 0.41 -0.3
20,523 - MPMX20_00019 0.44 +0.8
20,547 - MPMX20_00019 0.46 -0.7
20,650 + MPMX20_00019 0.52 -0.8
20,656 + MPMX20_00019 0.52 -0.4
20,656 + MPMX20_00019 0.52 +0.9
20,749 - MPMX20_00019 0.58 -0.1
20,974 + MPMX20_00019 0.72 -2.3
20,981 + MPMX20_00019 0.73 +0.1
21,003 - MPMX20_00019 0.74 +0.5
21,012 + MPMX20_00019 0.74 +0.7
21,031 + MPMX20_00019 0.76 -0.1
21,047 - MPMX20_00019 0.77 -1.8
21,047 - MPMX20_00019 0.77 -0.2
21,047 - MPMX20_00019 0.77 +0.2
21,152 - MPMX20_00019 0.83 +0.3
21,277 + -0.3
21,293 + -1.3
21,301 - -0.5
21,334 - -0.5
21,341 + -1.6
21,341 + -0.0
21,349 - +0.1
21,368 - +0.3
21,463 + +0.6
21,552 + +1.1
21,552 + +0.5
21,552 + +0.2
21,554 + -0.1
21,560 - MPMX20_00020 0.10 +2.1
21,560 - MPMX20_00020 0.10 -0.3
21,560 - MPMX20_00020 0.10 +0.6
21,565 + MPMX20_00020 0.11 -1.9
21,573 - MPMX20_00020 0.11 -0.2
21,586 + MPMX20_00020 0.12 -0.3
21,594 - MPMX20_00020 0.13 -0.9
21,631 + MPMX20_00020 0.16 -0.6
21,632 + MPMX20_00020 0.16 +0.0
21,642 + MPMX20_00020 0.17 +1.1
21,642 + MPMX20_00020 0.17 -0.4
21,650 - MPMX20_00020 0.17 +0.3
21,665 - MPMX20_00020 0.18 -0.1
21,669 + MPMX20_00020 0.19 -0.9
21,677 - MPMX20_00020 0.19 +0.2
21,677 - MPMX20_00020 0.19 -0.6
21,694 - MPMX20_00020 0.20 +0.3
21,733 - MPMX20_00020 0.23 -0.1
21,735 + MPMX20_00020 0.24 +0.3
21,735 + MPMX20_00020 0.24 +1.1
21,822 + MPMX20_00020 0.30 +0.4
21,830 - MPMX20_00020 0.31 +1.2
21,841 + MPMX20_00020 0.32 +0.9
21,856 + MPMX20_00020 0.33 -0.5
21,864 - MPMX20_00020 0.33 -0.2
21,865 - MPMX20_00020 0.33 +0.0
21,973 + MPMX20_00020 0.42 +2.9
21,981 - MPMX20_00020 0.42 -0.2
21,981 - MPMX20_00020 0.42 +0.3
21,990 - MPMX20_00020 0.43 -0.4
22,006 + MPMX20_00020 0.44 +0.1
22,185 + MPMX20_00020 0.58 +0.3
22,250 + MPMX20_00020 0.63 +0.8
22,302 + MPMX20_00020 0.66 -0.2
22,307 + MPMX20_00020 0.67 -0.6
22,307 + MPMX20_00020 0.67 -1.0
22,315 - MPMX20_00020 0.67 -2.8
22,366 - MPMX20_00020 0.71 +0.2
22,418 - MPMX20_00020 0.75 +1.6
22,461 + MPMX20_00020 0.78 -0.1
22,527 - MPMX20_00020 0.83 -0.1
22,527 - MPMX20_00020 0.83 +0.4
22,536 - MPMX20_00020 0.84 +0.3
22,545 + MPMX20_00020 0.85 -0.1
22,571 - MPMX20_00020 0.87 -0.3
22,609 + MPMX20_00020 0.90 -1.2
22,609 + MPMX20_00020 0.90 +0.3
22,609 + MPMX20_00020 0.90 -0.1
22,609 + MPMX20_00020 0.90 +1.1
22,653 - -1.4
22,655 + +0.0
22,655 + +0.8
22,655 + +0.3
22,663 - +1.1
22,724 + -0.1
22,724 + -0.9
22,737 - +0.4
22,811 - -1.9
22,861 + -0.3
22,919 - MPMX20_00021 0.24 +0.1
22,929 - MPMX20_00021 0.26 -1.4
22,942 + MPMX20_00021 0.30 +0.2
22,942 + MPMX20_00021 0.30 -0.2
22,942 + MPMX20_00021 0.30 +3.5
22,950 - MPMX20_00021 0.32 +0.2
22,950 - MPMX20_00021 0.32 -0.2
22,950 - MPMX20_00021 0.32 +0.1
22,957 - MPMX20_00021 0.34 -1.5
22,989 - MPMX20_00021 0.44 -0.6
22,989 - MPMX20_00021 0.44 -0.3
22,996 + MPMX20_00021 0.46 +0.0
22,996 + MPMX20_00021 0.46 -0.7
22,996 + MPMX20_00021 0.46 +0.0
23,004 - MPMX20_00021 0.48 +0.0
23,169 + -1.1
23,234 + MPMX20_00022 0.17 -1.3
23,320 - MPMX20_00022 0.42 -0.2
23,430 - MPMX20_00022 0.74 +0.2
23,430 - MPMX20_00022 0.74 +0.7
23,501 - +1.7
23,538 - -0.2
23,572 - +0.4
23,574 + -0.1
23,574 + -0.3
23,583 + -2.5
23,713 + MPMX20_00023 0.16 -0.0
23,713 + MPMX20_00023 0.16 +1.0

Or see this region's nucleotide sequence