Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS07695

Experiment: Aerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aerobic, pH5.5
1,646,866	+		ABCV34_RS07690	0.39	-2.9
1,646,866	+		ABCV34_RS07690	0.39	-2.7
1,646,866	+		ABCV34_RS07690	0.39	-2.0
1,646,888	-		ABCV34_RS07690	0.41	-2.5
1,646,896	+		ABCV34_RS07690	0.41	-2.2
1,646,896	+		ABCV34_RS07690	0.41	-2.7
1,646,897	-		ABCV34_RS07690	0.41	-3.4
1,646,897	-		ABCV34_RS07690	0.41	-2.7
1,646,897	-		ABCV34_RS07690	0.41	-2.3
1,646,899	+		ABCV34_RS07690	0.42	-3.1
1,646,899	+		ABCV34_RS07690	0.42	+0.5
1,646,899	+		ABCV34_RS07690	0.42	-2.8
1,646,899	+		ABCV34_RS07690	0.42	-3.9
1,646,900	-		ABCV34_RS07690	0.42	-3.1
1,647,300	+		ABCV34_RS07690	0.78	-2.5
1,647,300	+		ABCV34_RS07690	0.78	-2.9
1,647,300	+		ABCV34_RS07690	0.78	-2.2
1,647,300	+		ABCV34_RS07690	0.78	-3.1
1,647,301	-		ABCV34_RS07690	0.78	-2.5
1,647,301	-		ABCV34_RS07690	0.78	-2.6
1,647,301	-		ABCV34_RS07690	0.78	-2.2
1,647,301	-		ABCV34_RS07690	0.78	-2.8
1,647,439	+				-3.0
1,647,439	+				-2.5
1,647,439	+				-2.8
1,647,440	-				-2.3
1,647,447	+				-2.6
1,647,526	+				-2.8
1,647,526	+				-2.5
1,647,526	+				-1.8
1,647,526	+				-3.2
1,647,526	+				-2.6
1,647,526	+				-2.6
1,647,526	+				-2.3
1,647,527	-				-2.5
1,647,527	-				-2.2
1,647,527	-				-1.8
1,647,527	-				-2.6
1,647,527	-				-3.1
1,647,527	-				-2.2
1,647,527	-				-2.8
1,647,527	-				-2.5
1,647,527	-				-3.8
1,647,527	-				-2.7
1,647,527	-				-2.1
1,647,600	+				-2.9
1,647,600	+				-1.7
1,647,601	-				-2.8
1,647,601	-				-4.0
1,647,719	+				-2.0
1,647,719	+				-3.1
1,647,719	+				-2.0
1,647,719	+				-2.5
1,647,719	+				-2.6
1,647,719	+				-2.4
1,647,719	+				-3.3
1,647,720	-				-2.6
1,647,720	-				-2.2
1,647,720	-				-2.4
1,647,720	-				-2.1
1,647,720	-				-2.3
1,647,890	+		ABCV34_RS07695	0.20	-1.7
1,647,890	+		ABCV34_RS07695	0.20	-2.6
1,647,890	+		ABCV34_RS07695	0.20	-2.4
1,647,890	+		ABCV34_RS07695	0.20	-2.5
1,647,891	-		ABCV34_RS07695	0.20	-2.7
1,647,891	-		ABCV34_RS07695	0.20	-3.4
1,647,891	-		ABCV34_RS07695	0.20	-1.8
1,647,891	-		ABCV34_RS07695	0.20	-2.6
1,647,891	-		ABCV34_RS07695	0.20	-3.6
1,647,891	-		ABCV34_RS07695	0.20	-2.9
1,647,891	-		ABCV34_RS07695	0.20	-2.0
1,647,992	+		ABCV34_RS07695	0.37	-2.3
1,647,992	+		ABCV34_RS07695	0.37	-2.1
1,647,992	+		ABCV34_RS07695	0.37	-2.0
1,647,992	+		ABCV34_RS07695	0.37	-1.2
1,647,992	+		ABCV34_RS07695	0.37	-2.0
1,647,992	+		ABCV34_RS07695	0.37	-2.6
1,647,992	+		ABCV34_RS07695	0.37	-2.4
1,647,992	+		ABCV34_RS07695	0.37	-2.6
1,647,993	-		ABCV34_RS07695	0.37	-1.6
1,647,993	-		ABCV34_RS07695	0.37	-2.2
1,647,993	-		ABCV34_RS07695	0.37	-3.3
1,647,993	-		ABCV34_RS07695	0.37	-2.5
1,647,993	-		ABCV34_RS07695	0.37	-0.9
1,648,181	+		ABCV34_RS07695	0.68	-1.6
1,648,181	+		ABCV34_RS07695	0.68	-2.1
1,648,181	+		ABCV34_RS07695	0.68	-2.5
1,648,181	+		ABCV34_RS07695	0.68	-3.5
1,648,181	+		ABCV34_RS07695	0.68	-1.9
1,648,182	-		ABCV34_RS07695	0.68	-3.5
1,648,182	-		ABCV34_RS07695	0.68	-4.0
1,648,182	-		ABCV34_RS07695	0.68	-1.6
1,648,231	+		ABCV34_RS07695	0.77	-1.6
1,648,232	-		ABCV34_RS07695	0.77	-2.1
1,648,232	-		ABCV34_RS07695	0.77	-2.9
1,648,271	+		ABCV34_RS07695	0.83	-3.0
1,648,634	+				-2.3
1,648,634	+				-3.1
1,648,634	+				-2.4
1,648,634	+				-1.8
1,648,635	-				-2.4
1,648,635	-				-1.2
1,648,635	-				-1.5
1,648,635	-				-2.1
1,648,635	-				-1.9
1,648,635	-				-2.1
1,648,635	-				-1.1
1,648,850	+		ABCV34_RS07710	0.11	-3.3
1,648,851	-		ABCV34_RS07710	0.11	-1.6
1,648,851	-		ABCV34_RS07710	0.11	-3.8
1,648,851	-		ABCV34_RS07710	0.11	-3.3
1,648,932	+		ABCV34_RS07710	0.23	-2.2
1,648,932	+		ABCV34_RS07710	0.23	-2.2
1,648,932	+		ABCV34_RS07710	0.23	-1.8
1,648,932	+		ABCV34_RS07710	0.23	-3.0
1,648,933	-		ABCV34_RS07710	0.24	-1.6
1,648,933	-		ABCV34_RS07710	0.24	-2.9
1,648,933	-		ABCV34_RS07710	0.24	-2.2
1,648,933	-		ABCV34_RS07710	0.24	-1.6
1,648,933	-		ABCV34_RS07710	0.24	-1.5
1,648,933	-		ABCV34_RS07710	0.24	-2.8
1,648,933	-		ABCV34_RS07710	0.24	-2.8
1,649,153	-		ABCV34_RS07710	0.57	-1.6
1,649,153	-		ABCV34_RS07710	0.57	-3.9
1,649,156	+		ABCV34_RS07710	0.58	-2.5
1,649,156	+		ABCV34_RS07710	0.58	-2.3
1,649,156	+		ABCV34_RS07710	0.58	-2.8
1,649,157	-		ABCV34_RS07710	0.58	-2.2
1,649,157	-		ABCV34_RS07710	0.58	-2.2
1,649,157	-		ABCV34_RS07710	0.58	-3.2
1,649,157	-		ABCV34_RS07710	0.58	-2.9
1,649,345	-		ABCV34_RS07710	0.87	-1.6