Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04515

Experiment: Aerobic, pH5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aerobic, pH5.5
980,127	+				-2.9
980,127	+				-2.9
980,127	+				-2.3
980,127	+				-4.1
980,128	-				-1.1
980,150	+				-2.4
980,150	+				-4.4
980,150	+				-4.0
980,150	+				-3.2
980,150	+				-2.4
980,150	+				-3.1
980,150	+				-3.0
980,150	+				-3.4
980,150	+				-1.4
980,150	+				-0.7
980,150	+				-1.8
980,150	+				-1.8
980,150	+				-2.6
980,150	+				-2.8
980,150	+				-2.0
980,150	+				-3.3
980,150	+				-2.7
980,150	+				-3.2
980,150	+				-2.7
980,150	+				-2.7
980,150	+				-2.5
980,150	+				-1.8
980,150	+				-1.6
980,150	+				-2.8
980,150	+				-3.9
980,150	+				-2.5
980,150	+				-3.9
980,150	+				-1.4
980,150	+				-4.0
980,150	+				-2.8
980,150	+				-4.0
980,150	+				-2.0
980,150	+				-2.9
980,151	+				-2.1
980,151	-				-1.8
980,151	-				-1.4
980,151	-				-3.8
980,151	-				-2.9
980,151	-				-1.8
980,151	-				-3.6
980,151	-				-3.8
980,151	-				-3.9
980,151	-				-3.4
980,151	-				-0.0
980,151	-				-2.4
980,151	-				-0.1
980,151	-				-2.4
980,151	-				-2.2
980,151	-				-2.3
980,151	-				-2.7
980,151	-				-1.4
980,151	-				-2.5
980,151	-				-2.3
980,151	-				-2.4
980,151	-				-2.1
980,151	-				-2.1
980,151	-				-2.2
980,151	-				-2.5
980,363	+		ABCV34_RS04500	0.57	-3.2
980,363	+		ABCV34_RS04500	0.57	-4.4
980,364	-		ABCV34_RS04500	0.57	-2.6
980,364	-		ABCV34_RS04500	0.57	-2.6
980,364	-		ABCV34_RS04500	0.57	-3.3
980,364	-		ABCV34_RS04500	0.57	-1.8
980,364	-		ABCV34_RS04500	0.57	-2.2
980,364	-		ABCV34_RS04500	0.57	-2.4
980,384	+		ABCV34_RS04500	0.62	-4.3
980,384	+		ABCV34_RS04500	0.62	-3.5
980,385	-		ABCV34_RS04500	0.62	-1.4
980,385	-		ABCV34_RS04500	0.62	-2.0
980,385	-		ABCV34_RS04500	0.62	-1.4
980,385	-		ABCV34_RS04500	0.62	-2.6
980,393	+		ABCV34_RS04500	0.64	-2.3
980,474	+		ABCV34_RS04500	0.84	-1.8
980,474	+		ABCV34_RS04500	0.84	-2.3
980,474	+		ABCV34_RS04500	0.84	-3.3
980,474	+		ABCV34_RS04500	0.84	-3.4
980,545	-				-1.8
980,621	+				-2.8
980,621	+				-1.8
980,621	+				+0.2
980,621	+				-2.3
980,621	+				-1.3
980,621	+				-1.6
980,621	+				-2.2
980,622	-				-0.8
980,622	-				-1.7
980,622	-				-1.9
980,622	-				-3.3
980,622	-				-2.6
980,624	+				-1.1
980,624	+				-1.4
980,625	-				-2.8
980,659	-		ABCV34_RS04505	0.15	-2.9
980,659	-		ABCV34_RS04505	0.15	-2.7
980,659	-		ABCV34_RS04505	0.15	-2.5
980,659	-		ABCV34_RS04505	0.15	-2.6
980,659	-		ABCV34_RS04505	0.15	-2.2
980,672	+		ABCV34_RS04505	0.20	-1.4
980,673	-		ABCV34_RS04505	0.20	-1.6
980,673	-		ABCV34_RS04505	0.20	-1.7
980,673	-		ABCV34_RS04505	0.20	-2.2
980,673	-		ABCV34_RS04505	0.20	-2.3
980,673	-		ABCV34_RS04505	0.20	-2.7
980,673	-		ABCV34_RS04505	0.20	-3.3
980,689	-		ABCV34_RS04505	0.26	-2.2
980,689	-		ABCV34_RS04505	0.26	-2.5
980,732	-		ABCV34_RS04505	0.42	-2.8
980,832	-		ABCV34_RS04505	0.80	-3.0
980,838	-		ABCV34_RS04505	0.83	-2.4
980,838	-		ABCV34_RS04505	0.83	-2.8
980,838	-		ABCV34_RS04505	0.83	-2.6
980,838	-		ABCV34_RS04505	0.83	-2.6
980,838	-		ABCV34_RS04505	0.83	-2.3
980,838	-		ABCV34_RS04505	0.83	-2.8
980,838	-		ABCV34_RS04505	0.83	-2.0
980,838	-		ABCV34_RS04505	0.83	-1.6
980,838	-		ABCV34_RS04505	0.83	-2.5
980,838	-		ABCV34_RS04505	0.83	-2.3
980,838	-		ABCV34_RS04505	0.83	-3.0
980,838	-		ABCV34_RS04505	0.83	-2.7
980,909	-		ABCV34_RS04510	0.13	-1.8
980,976	-		ABCV34_RS04510	0.39	-1.8
981,157	+		ABCV34_RS04515	0.13	-2.2
981,157	+		ABCV34_RS04515	0.13	-4.0
981,158	-		ABCV34_RS04515	0.14	-2.3
981,192	+		ABCV34_RS04515	0.29	-3.1
981,192	+		ABCV34_RS04515	0.29	-2.8
981,312	-		ABCV34_RS04515	0.82	-2.7
981,320	+		ABCV34_RS04515	0.86	-3.2
981,320	+		ABCV34_RS04515	0.86	-4.7
981,321	-		ABCV34_RS04515	0.86	-1.6
981,385	+				-2.3
981,385	+				-1.4
981,385	+				-1.2
981,385	+				-2.3
981,386	-				-1.8
981,386	-				-2.5
981,386	-				-2.1
981,392	-				-2.1
981,392	-				-2.5
981,667	+		ABCV34_RS04520	0.45	-2.3
981,778	+		ABCV34_RS04520	0.63	-0.9
981,778	+		ABCV34_RS04520	0.63	-2.1
981,778	+		ABCV34_RS04520	0.63	-2.1
981,778	+		ABCV34_RS04520	0.63	-2.5
981,779	-		ABCV34_RS04520	0.63	-1.2
981,779	-		ABCV34_RS04520	0.63	-2.7
981,779	-		ABCV34_RS04520	0.63	-2.3
981,779	-		ABCV34_RS04520	0.63	-1.7
981,779	-		ABCV34_RS04520	0.63	-2.5
981,779	-		ABCV34_RS04520	0.63	-2.3
981,779	-		ABCV34_RS04520	0.63	-2.3
981,779	-		ABCV34_RS04520	0.63	-5.2
981,876	-		ABCV34_RS04520	0.79	-1.7
981,941	+		ABCV34_RS04520	0.89	-3.2
981,942	-		ABCV34_RS04520	0.89	-3.9
981,942	-		ABCV34_RS04520	0.89	-2.8
981,942	-		ABCV34_RS04520	0.89	-2.6
982,002	+				-2.2
982,002	+				-1.7
982,002	+				-2.6
982,002	+				-0.2
982,002	+				-2.9
982,002	+				-3.4
982,002	+				-0.4
982,002	+				-2.4
982,002	+				-3.1
982,002	+				-3.2
982,003	-				-1.6
982,003	-				-1.0
982,003	-				-2.9
982,003	-				-2.5
982,003	-				-3.0
982,003	-				-1.1
982,003	-				-2.2
982,003	-				-2.4
982,003	-				-3.0
982,003	-				-1.9
982,003	-				-2.0
982,003	-				-1.8
982,003	-				-2.2
982,018	+				-2.5
982,019	-				-3.0
982,019	-				-2.8
982,019	-				-2.6
982,019	-				-3.2
982,019	-				-3.2
982,025	+				-1.9
982,025	+				-4.4
982,025	+				-2.7
982,025	+				-3.0
982,025	+				-2.0
982,025	+				-1.4
982,025	+				-1.9
982,025	+				-1.5
982,026	-				-4.8
982,026	-				-3.1
982,026	-				-1.8
982,026	-				-2.0
982,026	-				-2.4