Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04150

Experiment: Aerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS04145 and ABCV34_RS04150 are separated by 107 nucleotidesABCV34_RS04150 and ABCV34_RS04155 are separated by 10 nucleotides ABCV34_RS04145: ABCV34_RS04145 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 899,503 to 900,915 _RS04145 ABCV34_RS04150: ABCV34_RS04150 - dihydrolipoyl dehydrogenase, at 901,023 to 902,816 _RS04150 ABCV34_RS04155: ABCV34_RS04155 - dihydrolipoyllysine-residue acetyltransferase, at 902,827 to 904,179 _RS04155 Position (kb) 901 902 903Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 900.953 kb on + strandat 900.956 kb on + strandat 900.956 kb on + strandat 900.956 kb on + strandat 900.956 kb on + strandat 900.956 kb on + strandat 900.956 kb on + strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.957 kb on - strandat 900.990 kb on + strandat 900.991 kb on - strandat 901.024 kb on + strandat 901.024 kb on + strandat 901.024 kb on + strandat 901.024 kb on + strandat 901.025 kb on - strandat 901.025 kb on - strandat 901.025 kb on - strandat 901.025 kb on - strandat 901.025 kb on - strandat 901.025 kb on - strandat 901.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, pH5.5
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900,953 + -3.2
900,956 + -4.0
900,956 + -1.1
900,956 + -1.4
900,956 + -3.0
900,956 + -0.8
900,956 + -0.6
900,957 - -2.9
900,957 - -4.3
900,957 - -3.3
900,957 - -2.9
900,957 - -1.1
900,957 - -1.7
900,957 - -1.7
900,990 + -2.1
900,991 - -3.2
901,024 + -2.4
901,024 + -2.8
901,024 + -2.5
901,024 + -1.7
901,025 - -2.2
901,025 - -2.2
901,025 - -2.0
901,025 - -3.1
901,025 - -2.1
901,025 - -3.5
901,025 - -2.5

Or see this region's nucleotide sequence