Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01615

Experiment: Aerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01605 and ABCV34_RS01610 are separated by 112 nucleotidesABCV34_RS01610 and ABCV34_RS01615 are separated by 104 nucleotidesABCV34_RS01615 and ABCV34_RS01620 overlap by 65 nucleotidesABCV34_RS01620 and ABCV34_RS01625 are separated by 2 nucleotides ABCV34_RS01605: ABCV34_RS01605 - adenosine deaminase, at 344,941 to 345,984 _RS01605 ABCV34_RS01610: ABCV34_RS01610 - DUF423 domain-containing protein, at 346,097 to 346,477 _RS01610 ABCV34_RS01615: ABCV34_RS01615 - acyl-CoA dehydrogenase family protein, at 346,582 to 348,228 _RS01615 ABCV34_RS01620: ABCV34_RS01620 - thermonuclease family protein, at 348,164 to 348,901 _RS01620 ABCV34_RS01625: ABCV34_RS01625 - DUF1178 family protein, at 348,904 to 349,413 _RS01625 Position (kb) 346 347 348 349Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 345.716 kb on + strand, within ABCV34_RS01605at 345.716 kb on + strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.717 kb on - strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.773 kb on + strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.774 kb on - strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.776 kb on + strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 345.777 kb on - strand, within ABCV34_RS01605at 346.017 kb on + strandat 346.017 kb on + strandat 346.017 kb on + strandat 346.018 kb on - strandat 346.018 kb on - strandat 346.018 kb on - strandat 346.018 kb on - strandat 346.018 kb on - strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.020 kb on - strandat 346.216 kb on - strand, within ABCV34_RS01610at 346.342 kb on - strand, within ABCV34_RS01610at 346.342 kb on - strand, within ABCV34_RS01610at 346.363 kb on + strand, within ABCV34_RS01610at 346.364 kb on - strand, within ABCV34_RS01610at 346.364 kb on - strand, within ABCV34_RS01610at 346.513 kb on + strandat 346.513 kb on + strandat 346.513 kb on + strandat 346.513 kb on + strandat 346.514 kb on - strandat 346.650 kb on + strandat 346.650 kb on + strandat 346.650 kb on + strandat 346.651 kb on - strandat 346.893 kb on + strand, within ABCV34_RS01615at 346.894 kb on - strand, within ABCV34_RS01615at 346.954 kb on + strand, within ABCV34_RS01615at 346.954 kb on + strand, within ABCV34_RS01615at 346.954 kb on + strand, within ABCV34_RS01615at 347.081 kb on - strand, within ABCV34_RS01615at 347.081 kb on - strand, within ABCV34_RS01615at 347.094 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.801 kb on - strand, within ABCV34_RS01615at 347.801 kb on - strand, within ABCV34_RS01615at 347.830 kb on + strand, within ABCV34_RS01615at 347.831 kb on - strand, within ABCV34_RS01615at 348.163 kb on + strandat 348.163 kb on + strandat 348.164 kb on - strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.236 kb on + strandat 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.630 kb on - strand, within ABCV34_RS01620at 348.645 kb on - strand, within ABCV34_RS01620at 348.655 kb on + strand, within ABCV34_RS01620at 348.655 kb on + strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.917 kb on + strandat 348.979 kb on + strand, within ABCV34_RS01625at 348.979 kb on + strand, within ABCV34_RS01625at 348.980 kb on - strand, within ABCV34_RS01625at 348.980 kb on - strand, within ABCV34_RS01625

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, pH5.5
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345,716 + ABCV34_RS01605 0.74 -2.1
345,716 + ABCV34_RS01605 0.74 -1.7
345,717 - ABCV34_RS01605 0.74 -2.2
345,717 - ABCV34_RS01605 0.74 -3.1
345,717 - ABCV34_RS01605 0.74 -1.7
345,717 - ABCV34_RS01605 0.74 -2.4
345,717 - ABCV34_RS01605 0.74 -2.6
345,717 - ABCV34_RS01605 0.74 -1.3
345,773 + ABCV34_RS01605 0.80 -3.6
345,773 + ABCV34_RS01605 0.80 -2.6
345,773 + ABCV34_RS01605 0.80 -2.3
345,773 + ABCV34_RS01605 0.80 -1.4
345,773 + ABCV34_RS01605 0.80 -1.7
345,773 + ABCV34_RS01605 0.80 -1.7
345,773 + ABCV34_RS01605 0.80 -2.7
345,773 + ABCV34_RS01605 0.80 -3.1
345,773 + ABCV34_RS01605 0.80 -3.4
345,774 - ABCV34_RS01605 0.80 -2.4
345,774 - ABCV34_RS01605 0.80 -2.9
345,774 - ABCV34_RS01605 0.80 -3.1
345,774 - ABCV34_RS01605 0.80 -2.7
345,774 - ABCV34_RS01605 0.80 -1.6
345,774 - ABCV34_RS01605 0.80 -0.7
345,774 - ABCV34_RS01605 0.80 -3.1
345,774 - ABCV34_RS01605 0.80 -2.0
345,776 + ABCV34_RS01605 0.80 -3.4
345,776 + ABCV34_RS01605 0.80 -3.0
345,776 + ABCV34_RS01605 0.80 -2.3
345,776 + ABCV34_RS01605 0.80 -2.7
345,776 + ABCV34_RS01605 0.80 -0.6
345,776 + ABCV34_RS01605 0.80 -3.3
345,776 + ABCV34_RS01605 0.80 -3.1
345,777 - ABCV34_RS01605 0.80 -2.7
345,777 - ABCV34_RS01605 0.80 -2.9
345,777 - ABCV34_RS01605 0.80 -1.8
345,777 - ABCV34_RS01605 0.80 -2.5
345,777 - ABCV34_RS01605 0.80 -3.0
345,777 - ABCV34_RS01605 0.80 -2.2
345,777 - ABCV34_RS01605 0.80 -1.4
345,777 - ABCV34_RS01605 0.80 -1.6
346,017 + -2.9
346,017 + -2.9
346,017 + -2.4
346,018 - -3.6
346,018 - -2.0
346,018 - -3.3
346,018 - -3.2
346,018 - -2.2
346,019 + -1.9
346,019 + -2.7
346,019 + -3.3
346,019 + -3.0
346,019 + -2.9
346,019 + -2.3
346,019 + -2.8
346,019 + -2.6
346,019 + -2.4
346,020 - -3.4
346,216 - ABCV34_RS01610 0.31 -2.1
346,342 - ABCV34_RS01610 0.64 -2.2
346,342 - ABCV34_RS01610 0.64 -3.6
346,363 + ABCV34_RS01610 0.70 -2.4
346,364 - ABCV34_RS01610 0.70 -1.9
346,364 - ABCV34_RS01610 0.70 -2.1
346,513 + -2.3
346,513 + -1.4
346,513 + -3.0
346,513 + -4.3
346,514 - -1.7
346,650 + -1.6
346,650 + -0.9
346,650 + -2.5
346,651 - +0.7
346,893 + ABCV34_RS01615 0.19 -2.9
346,894 - ABCV34_RS01615 0.19 -3.1
346,954 + ABCV34_RS01615 0.23 -3.3
346,954 + ABCV34_RS01615 0.23 -0.8
346,954 + ABCV34_RS01615 0.23 -2.4
347,081 - ABCV34_RS01615 0.30 -2.5
347,081 - ABCV34_RS01615 0.30 -2.6
347,094 + ABCV34_RS01615 0.31 -3.3
347,302 + ABCV34_RS01615 0.44 -2.3
347,302 + ABCV34_RS01615 0.44 -1.4
347,302 + ABCV34_RS01615 0.44 -2.1
347,302 + ABCV34_RS01615 0.44 -3.0
347,302 + ABCV34_RS01615 0.44 -2.6
347,302 + ABCV34_RS01615 0.44 -2.7
347,302 + ABCV34_RS01615 0.44 -3.3
347,302 + ABCV34_RS01615 0.44 -3.1
347,302 + ABCV34_RS01615 0.44 -3.2
347,303 - ABCV34_RS01615 0.44 -3.1
347,303 - ABCV34_RS01615 0.44 -2.6
347,303 - ABCV34_RS01615 0.44 -4.5
347,303 - ABCV34_RS01615 0.44 -2.4
347,303 - ABCV34_RS01615 0.44 -2.2
347,303 - ABCV34_RS01615 0.44 -2.0
347,303 - ABCV34_RS01615 0.44 -2.4
347,303 - ABCV34_RS01615 0.44 -2.4
347,303 - ABCV34_RS01615 0.44 -2.9
347,303 - ABCV34_RS01615 0.44 -1.6
347,303 - ABCV34_RS01615 0.44 -2.3
347,303 - ABCV34_RS01615 0.44 -2.0
347,303 - ABCV34_RS01615 0.44 -4.4
347,476 + ABCV34_RS01615 0.54 -3.2
347,476 + ABCV34_RS01615 0.54 -3.9
347,476 + ABCV34_RS01615 0.54 -2.5
347,477 - ABCV34_RS01615 0.54 -2.4
347,477 - ABCV34_RS01615 0.54 -3.4
347,477 - ABCV34_RS01615 0.54 -2.4
347,477 - ABCV34_RS01615 0.54 -3.0
347,477 - ABCV34_RS01615 0.54 -1.9
347,539 - ABCV34_RS01615 0.58 -2.7
347,539 - ABCV34_RS01615 0.58 -3.5
347,539 - ABCV34_RS01615 0.58 -3.1
347,800 + ABCV34_RS01615 0.74 -1.9
347,800 + ABCV34_RS01615 0.74 -1.7
347,800 + ABCV34_RS01615 0.74 -1.0
347,800 + ABCV34_RS01615 0.74 -1.5
347,801 - ABCV34_RS01615 0.74 -2.5
347,801 - ABCV34_RS01615 0.74 -3.5
347,830 + ABCV34_RS01615 0.76 -3.3
347,831 - ABCV34_RS01615 0.76 -2.3
348,163 + -3.1
348,163 + -2.1
348,164 - -1.7
348,231 + -1.7
348,231 + -2.3
348,231 + -2.3
348,231 + -2.4
348,231 + -3.0
348,232 - -2.3
348,232 - -1.9
348,232 - -2.1
348,232 - -2.8
348,232 - -2.3
348,232 - -1.5
348,232 - -3.3
348,236 + -2.6
348,422 + ABCV34_RS01620 0.35 -2.4
348,422 + ABCV34_RS01620 0.35 -3.2
348,422 + ABCV34_RS01620 0.35 -2.1
348,422 + ABCV34_RS01620 0.35 -2.4
348,422 + ABCV34_RS01620 0.35 -3.7
348,422 + ABCV34_RS01620 0.35 -2.9
348,423 - ABCV34_RS01620 0.35 -2.1
348,423 - ABCV34_RS01620 0.35 -2.0
348,423 - ABCV34_RS01620 0.35 -0.4
348,423 - ABCV34_RS01620 0.35 -2.5
348,423 - ABCV34_RS01620 0.35 -2.5
348,423 - ABCV34_RS01620 0.35 -3.8
348,423 - ABCV34_RS01620 0.35 -5.3
348,630 - ABCV34_RS01620 0.63 -3.3
348,645 - ABCV34_RS01620 0.65 -2.7
348,655 + ABCV34_RS01620 0.67 -2.0
348,655 + ABCV34_RS01620 0.67 -2.3
348,656 - ABCV34_RS01620 0.67 -3.1
348,656 - ABCV34_RS01620 0.67 -0.3
348,656 - ABCV34_RS01620 0.67 -2.9
348,656 - ABCV34_RS01620 0.67 -2.9
348,656 - ABCV34_RS01620 0.67 -4.2
348,656 - ABCV34_RS01620 0.67 -3.3
348,656 - ABCV34_RS01620 0.67 -3.0
348,656 - ABCV34_RS01620 0.67 -3.3
348,749 + ABCV34_RS01620 0.79 -2.3
348,749 + ABCV34_RS01620 0.79 -2.8
348,749 + ABCV34_RS01620 0.79 -2.2
348,750 - ABCV34_RS01620 0.79 -1.2
348,750 - ABCV34_RS01620 0.79 -1.7
348,750 - ABCV34_RS01620 0.79 -2.3
348,750 - ABCV34_RS01620 0.79 -1.3
348,750 - ABCV34_RS01620 0.79 -3.6
348,917 + -2.7
348,979 + ABCV34_RS01625 0.15 -3.4
348,979 + ABCV34_RS01625 0.15 -3.0
348,980 - ABCV34_RS01625 0.15 -2.5
348,980 - ABCV34_RS01625 0.15 -4.3

Or see this region's nucleotide sequence