Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08430

Experiment: Aerobic, pH5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS08425 and ABCV34_RS08430 are separated by 2 nucleotidesABCV34_RS08430 and ABCV34_RS08435 are separated by 10 nucleotides ABCV34_RS08425: ABCV34_RS08425 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 1,796,445 to 1,797,326 _RS08425 ABCV34_RS08430: ABCV34_RS08430 - tryptophan synthase subunit alpha, at 1,797,329 to 1,798,156 _RS08430 ABCV34_RS08435: ABCV34_RS08435 - tryptophan synthase subunit beta, at 1,798,167 to 1,799,366 _RS08435 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1at 1796.353 kb on - strandat 1798.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic, pH5.5
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1,796,353 - -0.8
1,798,169 - -3.2

Or see this region's nucleotide sequence