Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24410 and ECOLIN_RS24415 overlap by 4 nucleotides ECOLIN_RS24415 and ECOLIN_RS24420 are separated by 9 nucleotides ECOLIN_RS24420 and ECOLIN_RS24425 are separated by 9 nucleotides
ECOLIN_RS24410: ECOLIN_RS24410 - FAD-binding protein, at 4,903,163 to 4,905,235
_RS24410
ECOLIN_RS24415: ECOLIN_RS24415 - acyl CoA:acetate/3-ketoacid CoA transferase, at 4,905,232 to 4,906,773
_RS24415
ECOLIN_RS24420: ECOLIN_RS24420 - enoyl-CoA hydratase/isomerase family protein, at 4,906,783 to 4,907,559
_RS24420
ECOLIN_RS24425: ECOLIN_RS24425 - sugar phosphate isomerase/epimerase family protein, at 4,907,569 to 4,908,411
_RS24425
Position (kb) 4905
4906
4907 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4904.309 kb on - strand, within ECOLIN_RS24410 at 4904.311 kb on - strand, within ECOLIN_RS24410 at 4904.341 kb on + strand, within ECOLIN_RS24410 at 4904.342 kb on - strand, within ECOLIN_RS24410 at 4904.342 kb on - strand, within ECOLIN_RS24410 at 4904.344 kb on - strand, within ECOLIN_RS24410 at 4904.357 kb on + strand, within ECOLIN_RS24410 at 4904.361 kb on + strand, within ECOLIN_RS24410 at 4904.405 kb on + strand, within ECOLIN_RS24410 at 4904.405 kb on + strand, within ECOLIN_RS24410 at 4904.832 kb on + strand, within ECOLIN_RS24410 at 4905.010 kb on + strand, within ECOLIN_RS24410 at 4905.010 kb on + strand, within ECOLIN_RS24410 at 4905.010 kb on + strand, within ECOLIN_RS24410 at 4905.010 kb on + strand, within ECOLIN_RS24410 at 4905.011 kb on - strand, within ECOLIN_RS24410 at 4905.011 kb on - strand, within ECOLIN_RS24410 at 4905.012 kb on + strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.013 kb on - strand, within ECOLIN_RS24410 at 4905.074 kb on + strand at 4905.191 kb on - strand at 4905.405 kb on - strand, within ECOLIN_RS24415 at 4906.029 kb on - strand, within ECOLIN_RS24415 at 4906.107 kb on + strand, within ECOLIN_RS24415 at 4906.107 kb on + strand, within ECOLIN_RS24415 at 4906.182 kb on - strand, within ECOLIN_RS24415 at 4906.260 kb on - strand, within ECOLIN_RS24415 at 4906.318 kb on + strand, within ECOLIN_RS24415 at 4906.613 kb on - strand, within ECOLIN_RS24415 at 4906.613 kb on - strand, within ECOLIN_RS24415 at 4906.767 kb on + strand at 4906.767 kb on + strand at 4906.768 kb on - strand at 4906.768 kb on - strand at 4906.774 kb on - strand at 4906.774 kb on - strand at 4906.900 kb on - strand, within ECOLIN_RS24420 at 4906.926 kb on + strand, within ECOLIN_RS24420 at 4906.929 kb on + strand, within ECOLIN_RS24420 at 4907.330 kb on - strand, within ECOLIN_RS24420 at 4907.413 kb on + strand, within ECOLIN_RS24420 at 4907.577 kb on - strand at 4907.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 4,904,309 - ECOLIN_RS24410 0.55 +0.0 4,904,311 - ECOLIN_RS24410 0.55 +1.2 4,904,341 + ECOLIN_RS24410 0.57 -0.9 4,904,342 - ECOLIN_RS24410 0.57 +0.0 4,904,342 - ECOLIN_RS24410 0.57 -2.0 4,904,344 - ECOLIN_RS24410 0.57 +1.3 4,904,357 + ECOLIN_RS24410 0.58 -0.1 4,904,361 + ECOLIN_RS24410 0.58 +0.2 4,904,405 + ECOLIN_RS24410 0.60 +0.0 4,904,405 + ECOLIN_RS24410 0.60 +0.6 4,904,832 + ECOLIN_RS24410 0.81 +2.6 4,905,010 + ECOLIN_RS24410 0.89 +1.8 4,905,010 + ECOLIN_RS24410 0.89 +1.8 4,905,010 + ECOLIN_RS24410 0.89 +0.1 4,905,010 + ECOLIN_RS24410 0.89 +1.2 4,905,011 - ECOLIN_RS24410 0.89 +0.1 4,905,011 - ECOLIN_RS24410 0.89 +0.4 4,905,012 + ECOLIN_RS24410 0.89 +0.0 4,905,013 - ECOLIN_RS24410 0.89 -0.3 4,905,013 - ECOLIN_RS24410 0.89 +0.4 4,905,013 - ECOLIN_RS24410 0.89 +0.3 4,905,013 - ECOLIN_RS24410 0.89 -1.5 4,905,013 - ECOLIN_RS24410 0.89 +0.5 4,905,013 - ECOLIN_RS24410 0.89 -0.0 4,905,013 - ECOLIN_RS24410 0.89 +0.2 4,905,013 - ECOLIN_RS24410 0.89 +2.3 4,905,013 - ECOLIN_RS24410 0.89 -0.6 4,905,013 - ECOLIN_RS24410 0.89 +0.1 4,905,013 - ECOLIN_RS24410 0.89 -0.0 4,905,013 - ECOLIN_RS24410 0.89 +0.0 4,905,074 + +0.6 4,905,191 - -0.0 4,905,405 - ECOLIN_RS24415 0.11 +0.0 4,906,029 - ECOLIN_RS24415 0.52 +0.2 4,906,107 + ECOLIN_RS24415 0.57 +0.4 4,906,107 + ECOLIN_RS24415 0.57 +2.7 4,906,182 - ECOLIN_RS24415 0.62 -0.3 4,906,260 - ECOLIN_RS24415 0.67 -0.4 4,906,318 + ECOLIN_RS24415 0.70 -0.6 4,906,613 - ECOLIN_RS24415 0.90 -0.6 4,906,613 - ECOLIN_RS24415 0.90 -0.1 4,906,767 + +0.6 4,906,767 + +0.1 4,906,768 - -0.3 4,906,768 - -0.1 4,906,774 - +0.2 4,906,774 - +0.0 4,906,900 - ECOLIN_RS24420 0.15 +0.2 4,906,926 + ECOLIN_RS24420 0.18 +0.3 4,906,929 + ECOLIN_RS24420 0.19 +0.4 4,907,330 - ECOLIN_RS24420 0.70 -0.5 4,907,413 + ECOLIN_RS24420 0.81 -0.2 4,907,577 - -0.2 4,907,617 - +0.1
Or see this region's nucleotide sequence