Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23540 and ECOLIN_RS23545 overlap by 4 nucleotides ECOLIN_RS23545 and ECOLIN_RS23550 are separated by 393 nucleotides ECOLIN_RS23550 and ECOLIN_RS23555 are separated by 391 nucleotides
ECOLIN_RS23540: ECOLIN_RS23540 - cation/acetate symporter ActP, at 4,743,519 to 4,745,168
_RS23540
ECOLIN_RS23545: ECOLIN_RS23545 - DUF485 domain-containing protein, at 4,745,165 to 4,745,479
_RS23545
ECOLIN_RS23550: ECOLIN_RS23550 - acetate--CoA ligase, at 4,745,873 to 4,747,831
_RS23550
ECOLIN_RS23555: ECOLIN_RS23555 - ammonia-forming nitrite reductase cytochrome c552 subunit, at 4,748,223 to 4,749,659
_RS23555
Position (kb) 4745
4746
4747
4748 Strain fitness (log2 ratio) -1
0
1
2 at 4744.877 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.922 kb on - strand, within ECOLIN_RS23540 at 4744.922 kb on - strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4745.017 kb on + strand at 4745.236 kb on - strand, within ECOLIN_RS23545 at 4745.239 kb on + strand, within ECOLIN_RS23545 at 4745.354 kb on + strand, within ECOLIN_RS23545 at 4745.370 kb on + strand, within ECOLIN_RS23545 at 4745.502 kb on + strand at 4745.875 kb on - strand at 4746.137 kb on - strand, within ECOLIN_RS23550 at 4746.147 kb on + strand, within ECOLIN_RS23550 at 4746.154 kb on - strand, within ECOLIN_RS23550 at 4746.173 kb on - strand, within ECOLIN_RS23550 at 4746.345 kb on + strand, within ECOLIN_RS23550 at 4746.345 kb on + strand, within ECOLIN_RS23550 at 4746.346 kb on - strand, within ECOLIN_RS23550 at 4746.350 kb on - strand, within ECOLIN_RS23550 at 4746.369 kb on + strand, within ECOLIN_RS23550 at 4746.472 kb on + strand, within ECOLIN_RS23550 at 4746.473 kb on - strand, within ECOLIN_RS23550 at 4746.879 kb on + strand, within ECOLIN_RS23550 at 4746.888 kb on + strand, within ECOLIN_RS23550 at 4746.889 kb on - strand, within ECOLIN_RS23550 at 4746.889 kb on - strand, within ECOLIN_RS23550 at 4746.960 kb on + strand, within ECOLIN_RS23550 at 4746.965 kb on - strand, within ECOLIN_RS23550 at 4747.044 kb on + strand, within ECOLIN_RS23550 at 4747.190 kb on + strand, within ECOLIN_RS23550 at 4747.419 kb on + strand, within ECOLIN_RS23550 at 4747.419 kb on + strand, within ECOLIN_RS23550 at 4747.430 kb on + strand, within ECOLIN_RS23550 at 4747.502 kb on - strand, within ECOLIN_RS23550 at 4747.503 kb on + strand, within ECOLIN_RS23550 at 4747.510 kb on + strand, within ECOLIN_RS23550 at 4747.510 kb on + strand, within ECOLIN_RS23550 at 4747.630 kb on + strand, within ECOLIN_RS23550 at 4747.631 kb on - strand, within ECOLIN_RS23550 at 4747.738 kb on + strand at 4747.909 kb on + strand at 4747.910 kb on - strand at 4748.152 kb on - strand at 4748.152 kb on - strand at 4748.380 kb on - strand, within ECOLIN_RS23555 at 4748.597 kb on + strand, within ECOLIN_RS23555 at 4748.647 kb on - strand, within ECOLIN_RS23555 at 4748.695 kb on + strand, within ECOLIN_RS23555
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 4,744,877 + ECOLIN_RS23540 0.82 -0.0 4,744,919 + ECOLIN_RS23540 0.85 +0.2 4,744,919 + ECOLIN_RS23540 0.85 +0.7 4,744,919 + ECOLIN_RS23540 0.85 -0.5 4,744,920 - ECOLIN_RS23540 0.85 +0.2 4,744,920 - ECOLIN_RS23540 0.85 -0.1 4,744,920 - ECOLIN_RS23540 0.85 +0.4 4,744,921 + ECOLIN_RS23540 0.85 -0.2 4,744,921 + ECOLIN_RS23540 0.85 -0.3 4,744,921 + ECOLIN_RS23540 0.85 +0.4 4,744,922 - ECOLIN_RS23540 0.85 -0.7 4,744,922 - ECOLIN_RS23540 0.85 +0.2 4,744,978 + ECOLIN_RS23540 0.88 +0.2 4,744,978 + ECOLIN_RS23540 0.88 -0.1 4,744,978 + ECOLIN_RS23540 0.88 +0.1 4,745,017 + +0.4 4,745,236 - ECOLIN_RS23545 0.23 -0.6 4,745,239 + ECOLIN_RS23545 0.23 -0.2 4,745,354 + ECOLIN_RS23545 0.60 +0.1 4,745,370 + ECOLIN_RS23545 0.65 +1.7 4,745,502 + +0.1 4,745,875 - -1.0 4,746,137 - ECOLIN_RS23550 0.13 -0.1 4,746,147 + ECOLIN_RS23550 0.14 +0.1 4,746,154 - ECOLIN_RS23550 0.14 -0.2 4,746,173 - ECOLIN_RS23550 0.15 +0.0 4,746,345 + ECOLIN_RS23550 0.24 -0.1 4,746,345 + ECOLIN_RS23550 0.24 -1.0 4,746,346 - ECOLIN_RS23550 0.24 +0.3 4,746,350 - ECOLIN_RS23550 0.24 +0.1 4,746,369 + ECOLIN_RS23550 0.25 +0.2 4,746,472 + ECOLIN_RS23550 0.31 -0.3 4,746,473 - ECOLIN_RS23550 0.31 +0.2 4,746,879 + ECOLIN_RS23550 0.51 -0.0 4,746,888 + ECOLIN_RS23550 0.52 +0.6 4,746,889 - ECOLIN_RS23550 0.52 +0.3 4,746,889 - ECOLIN_RS23550 0.52 -0.7 4,746,960 + ECOLIN_RS23550 0.55 -0.3 4,746,965 - ECOLIN_RS23550 0.56 -0.0 4,747,044 + ECOLIN_RS23550 0.60 +0.6 4,747,190 + ECOLIN_RS23550 0.67 -0.2 4,747,419 + ECOLIN_RS23550 0.79 +0.4 4,747,419 + ECOLIN_RS23550 0.79 -0.0 4,747,430 + ECOLIN_RS23550 0.79 -0.1 4,747,502 - ECOLIN_RS23550 0.83 +0.2 4,747,503 + ECOLIN_RS23550 0.83 -0.0 4,747,510 + ECOLIN_RS23550 0.84 +0.8 4,747,510 + ECOLIN_RS23550 0.84 -0.0 4,747,630 + ECOLIN_RS23550 0.90 +0.1 4,747,631 - ECOLIN_RS23550 0.90 -0.2 4,747,738 + +2.4 4,747,909 + +0.2 4,747,910 - -0.4 4,748,152 - +0.6 4,748,152 - +1.7 4,748,380 - ECOLIN_RS23555 0.11 -0.3 4,748,597 + ECOLIN_RS23555 0.26 -0.1 4,748,647 - ECOLIN_RS23555 0.30 +0.3 4,748,695 + ECOLIN_RS23555 0.33 +0.5
Or see this region's nucleotide sequence