Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20790 and ECOLIN_RS20795 are separated by 6 nucleotides ECOLIN_RS20795 and ECOLIN_RS20800 are separated by 5 nucleotides ECOLIN_RS20800 and ECOLIN_RS20805 are separated by 33 nucleotides
ECOLIN_RS20790: ECOLIN_RS20790 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 4,186,735 to 4,188,843
_RS20790
ECOLIN_RS20795: ECOLIN_RS20795 - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 4,188,850 to 4,189,539
_RS20795
ECOLIN_RS20800: ECOLIN_RS20800 - ATP-dependent DNA helicase RecG, at 4,189,545 to 4,191,626
_RS20800
ECOLIN_RS20805: ECOLIN_RS20805 - sodium/glutamate symporter, at 4,191,660 to 4,192,865
_RS20805
Position (kb) 4189
4190
4191
4192 Strain fitness (log2 ratio) -1
0
1 at 4188.694 kb on - strand at 4188.734 kb on - strand at 4188.819 kb on + strand at 4188.842 kb on - strand at 4189.047 kb on + strand, within ECOLIN_RS20795 at 4189.051 kb on - strand, within ECOLIN_RS20795 at 4189.361 kb on - strand, within ECOLIN_RS20795 at 4189.538 kb on - strand at 4189.562 kb on - strand at 4189.608 kb on - strand at 4189.657 kb on + strand at 4189.712 kb on - strand at 4189.860 kb on - strand, within ECOLIN_RS20800 at 4189.914 kb on + strand, within ECOLIN_RS20800 at 4189.915 kb on - strand, within ECOLIN_RS20800 at 4189.948 kb on + strand, within ECOLIN_RS20800 at 4190.550 kb on - strand, within ECOLIN_RS20800 at 4190.676 kb on - strand, within ECOLIN_RS20800 at 4190.676 kb on - strand, within ECOLIN_RS20800 at 4191.014 kb on + strand, within ECOLIN_RS20800 at 4191.014 kb on + strand, within ECOLIN_RS20800 at 4191.014 kb on + strand, within ECOLIN_RS20800 at 4191.175 kb on + strand, within ECOLIN_RS20800 at 4191.298 kb on + strand, within ECOLIN_RS20800 at 4191.583 kb on + strand at 4191.583 kb on + strand at 4191.908 kb on - strand, within ECOLIN_RS20805 at 4191.908 kb on - strand, within ECOLIN_RS20805 at 4191.908 kb on - strand, within ECOLIN_RS20805 at 4191.930 kb on + strand, within ECOLIN_RS20805 at 4191.931 kb on - strand, within ECOLIN_RS20805 at 4191.931 kb on - strand, within ECOLIN_RS20805 at 4192.023 kb on + strand, within ECOLIN_RS20805 at 4192.024 kb on - strand, within ECOLIN_RS20805 at 4192.024 kb on - strand, within ECOLIN_RS20805 at 4192.111 kb on - strand, within ECOLIN_RS20805 at 4192.111 kb on - strand, within ECOLIN_RS20805 at 4192.111 kb on - strand, within ECOLIN_RS20805 at 4192.114 kb on - strand, within ECOLIN_RS20805 at 4192.114 kb on - strand, within ECOLIN_RS20805 at 4192.146 kb on - strand, within ECOLIN_RS20805 at 4192.191 kb on - strand, within ECOLIN_RS20805 at 4192.431 kb on - strand, within ECOLIN_RS20805 at 4192.472 kb on + strand, within ECOLIN_RS20805 at 4192.473 kb on - strand, within ECOLIN_RS20805 at 4192.524 kb on - strand, within ECOLIN_RS20805
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 4,188,694 - -1.2 4,188,734 - -0.0 4,188,819 + -0.8 4,188,842 - -0.3 4,189,047 + ECOLIN_RS20795 0.29 +0.5 4,189,051 - ECOLIN_RS20795 0.29 +0.0 4,189,361 - ECOLIN_RS20795 0.74 -0.7 4,189,538 - -1.0 4,189,562 - +1.0 4,189,608 - -0.4 4,189,657 + -0.2 4,189,712 - -0.8 4,189,860 - ECOLIN_RS20800 0.15 -0.4 4,189,914 + ECOLIN_RS20800 0.18 +1.4 4,189,915 - ECOLIN_RS20800 0.18 +0.0 4,189,948 + ECOLIN_RS20800 0.19 +0.2 4,190,550 - ECOLIN_RS20800 0.48 +0.4 4,190,676 - ECOLIN_RS20800 0.54 +0.4 4,190,676 - ECOLIN_RS20800 0.54 +0.4 4,191,014 + ECOLIN_RS20800 0.71 +0.2 4,191,014 + ECOLIN_RS20800 0.71 -0.2 4,191,014 + ECOLIN_RS20800 0.71 +0.4 4,191,175 + ECOLIN_RS20800 0.78 -1.1 4,191,298 + ECOLIN_RS20800 0.84 -0.3 4,191,583 + +0.1 4,191,583 + +0.6 4,191,908 - ECOLIN_RS20805 0.21 -0.1 4,191,908 - ECOLIN_RS20805 0.21 -0.1 4,191,908 - ECOLIN_RS20805 0.21 -0.3 4,191,930 + ECOLIN_RS20805 0.22 -0.7 4,191,931 - ECOLIN_RS20805 0.22 +0.1 4,191,931 - ECOLIN_RS20805 0.22 +0.2 4,192,023 + ECOLIN_RS20805 0.30 +0.6 4,192,024 - ECOLIN_RS20805 0.30 +0.1 4,192,024 - ECOLIN_RS20805 0.30 -0.7 4,192,111 - ECOLIN_RS20805 0.37 -0.6 4,192,111 - ECOLIN_RS20805 0.37 +0.1 4,192,111 - ECOLIN_RS20805 0.37 -0.1 4,192,114 - ECOLIN_RS20805 0.38 -0.2 4,192,114 - ECOLIN_RS20805 0.38 +0.1 4,192,146 - ECOLIN_RS20805 0.40 +0.1 4,192,191 - ECOLIN_RS20805 0.44 +0.0 4,192,431 - ECOLIN_RS20805 0.64 +0.2 4,192,472 + ECOLIN_RS20805 0.67 -0.1 4,192,473 - ECOLIN_RS20805 0.67 -0.2 4,192,524 - ECOLIN_RS20805 0.72 -0.4
Or see this region's nucleotide sequence