Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS18440 and ECOLIN_RS18445 overlap by 4 nucleotides ECOLIN_RS18445 and ECOLIN_RS18450 are separated by 212 nucleotides ECOLIN_RS18450 and ECOLIN_RS18455 overlap by 4 nucleotides ECOLIN_RS18455 and ECOLIN_RS18460 overlap by 4 nucleotides
ECOLIN_RS18440: ECOLIN_RS18440 - RNase adapter RapZ, at 3,710,953 to 3,711,807
_RS18440
ECOLIN_RS18445: ECOLIN_RS18445 - PTS phosphocarrier protein NPr, at 3,711,804 to 3,712,076
_RS18445
ECOLIN_RS18450: ECOLIN_RS18450 - PhoP regulatory network protein YrbL, at 3,712,289 to 3,712,921
_RS18450
ECOLIN_RS18455: ECOLIN_RS18455 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,712,918 to 3,713,646
_RS18455
ECOLIN_RS18460: ECOLIN_RS18460 - isoprenoid biosynthesis glyoxalase ElbB, at 3,713,643 to 3,714,296
_RS18460
Position (kb) 3712
3713 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 3711.607 kb on - strand, within ECOLIN_RS18440 at 3711.626 kb on - strand, within ECOLIN_RS18440 at 3711.645 kb on + strand, within ECOLIN_RS18440 at 3711.646 kb on - strand, within ECOLIN_RS18440 at 3711.666 kb on + strand, within ECOLIN_RS18440 at 3711.670 kb on + strand, within ECOLIN_RS18440 at 3711.670 kb on + strand, within ECOLIN_RS18440 at 3711.719 kb on - strand, within ECOLIN_RS18440 at 3711.720 kb on + strand, within ECOLIN_RS18440 at 3711.720 kb on + strand, within ECOLIN_RS18440 at 3711.910 kb on + strand, within ECOLIN_RS18445 at 3712.052 kb on + strand at 3712.075 kb on - strand at 3712.252 kb on + strand at 3712.252 kb on + strand at 3712.272 kb on + strand at 3712.272 kb on + strand at 3712.343 kb on + strand at 3712.385 kb on + strand, within ECOLIN_RS18450 at 3712.385 kb on + strand, within ECOLIN_RS18450 at 3712.428 kb on + strand, within ECOLIN_RS18450 at 3712.434 kb on - strand, within ECOLIN_RS18450 at 3713.040 kb on + strand, within ECOLIN_RS18455 at 3713.047 kb on + strand, within ECOLIN_RS18455 at 3713.047 kb on + strand, within ECOLIN_RS18455 at 3713.047 kb on + strand, within ECOLIN_RS18455 at 3713.048 kb on - strand, within ECOLIN_RS18455 at 3713.080 kb on - strand, within ECOLIN_RS18455 at 3713.105 kb on + strand, within ECOLIN_RS18455 at 3713.260 kb on + strand, within ECOLIN_RS18455 at 3713.720 kb on + strand, within ECOLIN_RS18460 at 3713.720 kb on + strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.721 kb on - strand, within ECOLIN_RS18460 at 3713.722 kb on + strand, within ECOLIN_RS18460 at 3713.722 kb on + strand, within ECOLIN_RS18460 at 3713.722 kb on + strand, within ECOLIN_RS18460 at 3713.890 kb on - strand, within ECOLIN_RS18460 at 3713.891 kb on + strand, within ECOLIN_RS18460 at 3713.891 kb on + strand, within ECOLIN_RS18460 at 3713.892 kb on - strand, within ECOLIN_RS18460 at 3713.892 kb on - strand, within ECOLIN_RS18460 at 3713.898 kb on - strand, within ECOLIN_RS18460
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 3,711,607 - ECOLIN_RS18440 0.76 +0.9 3,711,626 - ECOLIN_RS18440 0.79 -0.3 3,711,645 + ECOLIN_RS18440 0.81 +0.8 3,711,646 - ECOLIN_RS18440 0.81 -0.6 3,711,666 + ECOLIN_RS18440 0.83 +0.1 3,711,670 + ECOLIN_RS18440 0.84 +0.5 3,711,670 + ECOLIN_RS18440 0.84 -0.6 3,711,719 - ECOLIN_RS18440 0.90 -0.4 3,711,720 + ECOLIN_RS18440 0.90 -0.1 3,711,720 + ECOLIN_RS18440 0.90 -1.6 3,711,910 + ECOLIN_RS18445 0.39 -0.5 3,712,052 + +6.9 3,712,075 - +0.4 3,712,252 + +0.1 3,712,252 + +0.9 3,712,272 + +0.4 3,712,272 + -0.1 3,712,343 + +0.1 3,712,385 + ECOLIN_RS18450 0.15 +1.4 3,712,385 + ECOLIN_RS18450 0.15 -0.0 3,712,428 + ECOLIN_RS18450 0.22 -0.7 3,712,434 - ECOLIN_RS18450 0.23 -0.2 3,713,040 + ECOLIN_RS18455 0.17 -0.4 3,713,047 + ECOLIN_RS18455 0.18 +0.4 3,713,047 + ECOLIN_RS18455 0.18 -0.9 3,713,047 + ECOLIN_RS18455 0.18 +0.2 3,713,048 - ECOLIN_RS18455 0.18 +0.4 3,713,080 - ECOLIN_RS18455 0.22 +0.5 3,713,105 + ECOLIN_RS18455 0.26 +1.2 3,713,260 + ECOLIN_RS18455 0.47 +0.4 3,713,720 + ECOLIN_RS18460 0.12 +0.3 3,713,720 + ECOLIN_RS18460 0.12 +0.2 3,713,721 - ECOLIN_RS18460 0.12 -0.3 3,713,721 - ECOLIN_RS18460 0.12 +0.5 3,713,721 - ECOLIN_RS18460 0.12 -0.1 3,713,721 - ECOLIN_RS18460 0.12 +0.7 3,713,721 - ECOLIN_RS18460 0.12 -0.3 3,713,721 - ECOLIN_RS18460 0.12 +0.2 3,713,721 - ECOLIN_RS18460 0.12 +0.1 3,713,722 + ECOLIN_RS18460 0.12 +0.3 3,713,722 + ECOLIN_RS18460 0.12 +0.2 3,713,722 + ECOLIN_RS18460 0.12 +0.4 3,713,890 - ECOLIN_RS18460 0.38 +0.2 3,713,891 + ECOLIN_RS18460 0.38 -0.9 3,713,891 + ECOLIN_RS18460 0.38 -0.8 3,713,892 - ECOLIN_RS18460 0.38 -0.3 3,713,892 - ECOLIN_RS18460 0.38 +0.5 3,713,898 - ECOLIN_RS18460 0.39 -0.6
Or see this region's nucleotide sequence