Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03105 and ECOLIN_RS03110 are separated by 0 nucleotides ECOLIN_RS03110 and ECOLIN_RS03115 overlap by 14 nucleotides
ECOLIN_RS03105: ECOLIN_RS03105 - DUF4434 family protein, at 635,927 to 636,817
_RS03105
ECOLIN_RS03110: ECOLIN_RS03110 - bacteriophage adsorption protein NfrA, at 636,818 to 639,790
_RS03110
ECOLIN_RS03115: ECOLIN_RS03115 - 'cyclic di-3',5'-guanylate-activated glycosyltransferase NrfB' pseudo=_no_value transl_table=11, at 639,777 to 642,014
_RS03115
Position (kb) 636
637
638
639
640 Strain fitness (log2 ratio) -1
0
1 at 636.137 kb on + strand, within ECOLIN_RS03105 at 636.581 kb on - strand, within ECOLIN_RS03105 at 636.597 kb on - strand, within ECOLIN_RS03105 at 637.126 kb on - strand, within ECOLIN_RS03110 at 637.471 kb on + strand, within ECOLIN_RS03110 at 637.947 kb on + strand, within ECOLIN_RS03110 at 638.292 kb on + strand, within ECOLIN_RS03110 at 638.292 kb on + strand, within ECOLIN_RS03110 at 638.292 kb on + strand, within ECOLIN_RS03110 at 638.293 kb on - strand, within ECOLIN_RS03110 at 638.391 kb on - strand, within ECOLIN_RS03110 at 638.841 kb on + strand, within ECOLIN_RS03110 at 639.293 kb on + strand, within ECOLIN_RS03110 at 639.649 kb on - strand at 640.217 kb on + strand, within ECOLIN_RS03115 at 640.251 kb on - strand, within ECOLIN_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 636,137 + ECOLIN_RS03105 0.24 +0.3 636,581 - ECOLIN_RS03105 0.73 -1.1 636,597 - ECOLIN_RS03105 0.75 +0.1 637,126 - ECOLIN_RS03110 0.10 +0.9 637,471 + ECOLIN_RS03110 0.22 +0.2 637,947 + ECOLIN_RS03110 0.38 -0.6 638,292 + ECOLIN_RS03110 0.50 -0.1 638,292 + ECOLIN_RS03110 0.50 -1.2 638,292 + ECOLIN_RS03110 0.50 +0.0 638,293 - ECOLIN_RS03110 0.50 -0.9 638,391 - ECOLIN_RS03110 0.53 +0.4 638,841 + ECOLIN_RS03110 0.68 -0.4 639,293 + ECOLIN_RS03110 0.83 -1.2 639,649 - -0.5 640,217 + ECOLIN_RS03115 0.20 +0.9 640,251 - ECOLIN_RS03115 0.21 +0.4
Or see this region's nucleotide sequence