Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS01000

Experiment: Control_Nissle

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS00990 and ECOLIN_RS00995 overlap by 4 nucleotidesECOLIN_RS00995 and ECOLIN_RS01000 are separated by 36 nucleotidesECOLIN_RS01000 and ECOLIN_RS01005 are separated by 12 nucleotides ECOLIN_RS00990: ECOLIN_RS00990 - lipid-A-disaccharide synthase, at 210,996 to 212,144 _RS00990 ECOLIN_RS00995: ECOLIN_RS00995 - ribonuclease HII, at 212,141 to 212,737 _RS00995 ECOLIN_RS01000: ECOLIN_RS01000 - DNA polymerase III subunit alpha, at 212,774 to 216,256 _RS01000 ECOLIN_RS01005: ECOLIN_RS01005 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 216,269 to 217,228 _RS01005 Position (kb) 212 213 214 215 216 217Strain fitness (log2 ratio) -1 0 1at 212.156 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_Nissle
remove
212,156 + -0.4

Or see this region's nucleotide sequence