Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS25940 and ECOLIN_RS25945 are separated by 834 nucleotides ECOLIN_RS25945 and ECOLIN_RS25950 are separated by 283 nucleotides ECOLIN_RS25950 and ECOLIN_RS33305 are separated by 388 nucleotides
ECOLIN_RS25940: ECOLIN_RS25940 - hypothetical protein, at 5,203,773 to 5,204,201
_RS25940
ECOLIN_RS25945: ECOLIN_RS25945 - Rop family plasmid primer RNA-binding protein, at 5,205,036 to 5,205,230
_RS25945
ECOLIN_RS25950: ECOLIN_RS25950 - plasmid mobilization protein MobA, at 5,205,514 to 5,205,837
_RS25950
ECOLIN_RS33305: ECOLIN_RS33305 - helix-turn-helix domain-containing protein, at 5,206,226 to 5,206,594
_RS33305
Position (kb) 5205
5206 Strain fitness (log2 ratio) -1
0
1
2
3 at 5204.038 kb on + strand, within ECOLIN_RS25940 at 5204.038 kb on + strand, within ECOLIN_RS25940 at 5204.038 kb on + strand, within ECOLIN_RS25940 at 5204.053 kb on + strand, within ECOLIN_RS25940 at 5204.069 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.075 kb on + strand, within ECOLIN_RS25940 at 5204.076 kb on - strand, within ECOLIN_RS25940 at 5204.076 kb on - strand, within ECOLIN_RS25940 at 5204.076 kb on - strand, within ECOLIN_RS25940 at 5204.076 kb on - strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.091 kb on + strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.092 kb on - strand, within ECOLIN_RS25940 at 5204.111 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.141 kb on + strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.142 kb on - strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.143 kb on + strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.144 kb on - strand, within ECOLIN_RS25940 at 5204.152 kb on + strand, within ECOLIN_RS25940 at 5204.163 kb on + strand at 5204.182 kb on + strand at 5204.182 kb on + strand at 5204.182 kb on + strand at 5204.182 kb on + strand at 5204.182 kb on + strand at 5204.182 kb on + strand at 5204.183 kb on - strand at 5204.183 kb on - strand at 5204.183 kb on - strand at 5204.183 kb on - strand at 5204.183 kb on - strand at 5204.216 kb on - strand at 5204.382 kb on + strand at 5204.418 kb on + strand at 5204.889 kb on + strand at 5204.889 kb on + strand at 5204.892 kb on + strand at 5204.979 kb on + strand at 5204.979 kb on + strand at 5204.979 kb on + strand at 5204.979 kb on + strand at 5204.979 kb on + strand at 5204.980 kb on - strand at 5204.980 kb on - strand at 5205.007 kb on + strand at 5205.007 kb on + strand at 5205.007 kb on + strand at 5205.008 kb on - strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.037 kb on + strand at 5205.075 kb on + strand, within ECOLIN_RS25945 at 5205.075 kb on + strand, within ECOLIN_RS25945 at 5205.075 kb on + strand, within ECOLIN_RS25945 at 5205.075 kb on + strand, within ECOLIN_RS25945 at 5205.075 kb on + strand, within ECOLIN_RS25945 at 5205.186 kb on + strand, within ECOLIN_RS25945 at 5205.186 kb on + strand, within ECOLIN_RS25945 at 5205.224 kb on + strand at 5205.224 kb on + strand at 5205.224 kb on + strand at 5205.224 kb on + strand at 5205.224 kb on + strand at 5205.225 kb on - strand at 5205.274 kb on + strand at 5205.275 kb on - strand at 5205.276 kb on + strand at 5205.440 kb on + strand at 5205.451 kb on + strand at 5205.451 kb on + strand at 5205.451 kb on + strand at 5205.451 kb on + strand at 5205.451 kb on + strand at 5205.454 kb on + strand at 5205.454 kb on + strand at 5205.454 kb on + strand at 5205.454 kb on + strand at 5205.454 kb on + strand at 5205.454 kb on + strand at 5205.455 kb on - strand at 5205.513 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.534 kb on + strand at 5205.535 kb on - strand at 5205.535 kb on - strand at 5205.535 kb on - strand at 5205.537 kb on + strand at 5205.538 kb on - strand at 5205.538 kb on - strand at 5205.538 kb on - strand at 5205.538 kb on - strand at 5205.552 kb on + strand, within ECOLIN_RS25950 at 5205.553 kb on - strand, within ECOLIN_RS25950
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 5,204,038 + ECOLIN_RS25940 0.62 +1.0 5,204,038 + ECOLIN_RS25940 0.62 +0.9 5,204,038 + ECOLIN_RS25940 0.62 +1.0 5,204,053 + ECOLIN_RS25940 0.65 +1.2 5,204,069 + ECOLIN_RS25940 0.69 +1.0 5,204,075 + ECOLIN_RS25940 0.70 +1.0 5,204,075 + ECOLIN_RS25940 0.70 +1.0 5,204,075 + ECOLIN_RS25940 0.70 +0.9 5,204,075 + ECOLIN_RS25940 0.70 +1.0 5,204,075 + ECOLIN_RS25940 0.70 +1.0 5,204,075 + ECOLIN_RS25940 0.70 +1.0 5,204,076 - ECOLIN_RS25940 0.71 +0.8 5,204,076 - ECOLIN_RS25940 0.71 +1.1 5,204,076 - ECOLIN_RS25940 0.71 +1.0 5,204,076 - ECOLIN_RS25940 0.71 +1.3 5,204,091 + ECOLIN_RS25940 0.74 +1.0 5,204,091 + ECOLIN_RS25940 0.74 +0.8 5,204,091 + ECOLIN_RS25940 0.74 +0.8 5,204,091 + ECOLIN_RS25940 0.74 +0.9 5,204,091 + ECOLIN_RS25940 0.74 +1.0 5,204,091 + ECOLIN_RS25940 0.74 +0.9 5,204,092 - ECOLIN_RS25940 0.74 +0.9 5,204,092 - ECOLIN_RS25940 0.74 +1.1 5,204,092 - ECOLIN_RS25940 0.74 +1.3 5,204,092 - ECOLIN_RS25940 0.74 +1.1 5,204,092 - ECOLIN_RS25940 0.74 +1.0 5,204,092 - ECOLIN_RS25940 0.74 +1.4 5,204,092 - ECOLIN_RS25940 0.74 +1.1 5,204,092 - ECOLIN_RS25940 0.74 +0.8 5,204,092 - ECOLIN_RS25940 0.74 +1.0 5,204,092 - ECOLIN_RS25940 0.74 +1.1 5,204,111 + ECOLIN_RS25940 0.79 +0.8 5,204,141 + ECOLIN_RS25940 0.86 +0.7 5,204,141 + ECOLIN_RS25940 0.86 +1.1 5,204,141 + ECOLIN_RS25940 0.86 +0.7 5,204,141 + ECOLIN_RS25940 0.86 +0.3 5,204,141 + ECOLIN_RS25940 0.86 +1.1 5,204,141 + ECOLIN_RS25940 0.86 +3.3 5,204,141 + ECOLIN_RS25940 0.86 +0.3 5,204,141 + ECOLIN_RS25940 0.86 +1.0 5,204,141 + ECOLIN_RS25940 0.86 +1.0 5,204,141 + ECOLIN_RS25940 0.86 +0.8 5,204,141 + ECOLIN_RS25940 0.86 +0.9 5,204,142 - ECOLIN_RS25940 0.86 +1.0 5,204,142 - ECOLIN_RS25940 0.86 +1.9 5,204,142 - ECOLIN_RS25940 0.86 +1.0 5,204,142 - ECOLIN_RS25940 0.86 +0.7 5,204,142 - ECOLIN_RS25940 0.86 +0.9 5,204,142 - ECOLIN_RS25940 0.86 +1.0 5,204,142 - ECOLIN_RS25940 0.86 +1.1 5,204,142 - ECOLIN_RS25940 0.86 +1.0 5,204,142 - ECOLIN_RS25940 0.86 +1.1 5,204,142 - ECOLIN_RS25940 0.86 +1.0 5,204,143 + ECOLIN_RS25940 0.86 +0.9 5,204,143 + ECOLIN_RS25940 0.86 +0.8 5,204,143 + ECOLIN_RS25940 0.86 +0.9 5,204,143 + ECOLIN_RS25940 0.86 +0.8 5,204,143 + ECOLIN_RS25940 0.86 +0.8 5,204,143 + ECOLIN_RS25940 0.86 +0.1 5,204,144 - ECOLIN_RS25940 0.86 +1.0 5,204,144 - ECOLIN_RS25940 0.86 +1.0 5,204,144 - ECOLIN_RS25940 0.86 +1.1 5,204,144 - ECOLIN_RS25940 0.86 +1.1 5,204,144 - ECOLIN_RS25940 0.86 +0.8 5,204,144 - ECOLIN_RS25940 0.86 +1.1 5,204,144 - ECOLIN_RS25940 0.86 +1.1 5,204,144 - ECOLIN_RS25940 0.86 +1.2 5,204,144 - ECOLIN_RS25940 0.86 +1.1 5,204,144 - ECOLIN_RS25940 0.86 +1.0 5,204,152 + ECOLIN_RS25940 0.88 +0.7 5,204,163 + +1.0 5,204,182 + +0.8 5,204,182 + +2.1 5,204,182 + +0.9 5,204,182 + +1.0 5,204,182 + +1.0 5,204,182 + +1.0 5,204,183 - +1.1 5,204,183 - +0.9 5,204,183 - +1.0 5,204,183 - +0.8 5,204,183 - +0.9 5,204,216 - +1.6 5,204,382 + -0.5 5,204,418 + +0.7 5,204,889 + +0.3 5,204,889 + +0.2 5,204,892 + +0.9 5,204,979 + +0.5 5,204,979 + +1.0 5,204,979 + +1.2 5,204,979 + +0.5 5,204,979 + +0.8 5,204,980 - +0.8 5,204,980 - +1.8 5,205,007 + +1.3 5,205,007 + +1.1 5,205,007 + +0.8 5,205,008 - -0.9 5,205,037 + +0.9 5,205,037 + +0.9 5,205,037 + +0.9 5,205,037 + +0.8 5,205,037 + +0.5 5,205,037 + +1.1 5,205,037 + +1.0 5,205,075 + ECOLIN_RS25945 0.20 +1.3 5,205,075 + ECOLIN_RS25945 0.20 +0.8 5,205,075 + ECOLIN_RS25945 0.20 +1.3 5,205,075 + ECOLIN_RS25945 0.20 +1.1 5,205,075 + ECOLIN_RS25945 0.20 +1.1 5,205,186 + ECOLIN_RS25945 0.77 +1.0 5,205,186 + ECOLIN_RS25945 0.77 +0.8 5,205,224 + +1.0 5,205,224 + +1.0 5,205,224 + +1.0 5,205,224 + +1.0 5,205,224 + +1.0 5,205,225 - +2.3 5,205,274 + +1.3 5,205,275 - +0.3 5,205,276 + +1.0 5,205,440 + +0.5 5,205,451 + -0.6 5,205,451 + +1.1 5,205,451 + +0.3 5,205,451 + +1.0 5,205,451 + +0.8 5,205,454 + +0.6 5,205,454 + +1.3 5,205,454 + +0.7 5,205,454 + +0.7 5,205,454 + +1.3 5,205,454 + +0.8 5,205,455 - +2.3 5,205,513 + +0.6 5,205,534 + +0.8 5,205,534 + +0.7 5,205,534 + +0.7 5,205,534 + +0.9 5,205,534 + +0.2 5,205,534 + +0.8 5,205,534 + +0.9 5,205,534 + +0.7 5,205,534 + +0.8 5,205,535 - +0.3 5,205,535 - -0.6 5,205,535 - +0.2 5,205,537 + +0.7 5,205,538 - +1.1 5,205,538 - +0.4 5,205,538 - +0.4 5,205,538 - +1.3 5,205,552 + ECOLIN_RS25950 0.12 +0.7 5,205,553 - ECOLIN_RS25950 0.12 +2.0
Or see this region's nucleotide sequence