Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23200 and ECOLIN_RS23205 are separated by 65 nucleotides ECOLIN_RS23205 and ECOLIN_RS23210 overlap by 1 nucleotides ECOLIN_RS23210 and ECOLIN_RS23215 are separated by 9 nucleotides ECOLIN_RS23215 and ECOLIN_RS23220 are separated by 69 nucleotides
ECOLIN_RS23200: ECOLIN_RS23200 - PTS mannose/fructose/sorbose transporter subunit IIC, at 4,669,390 to 4,670,187
_RS23200
ECOLIN_RS23205: ECOLIN_RS23205 - PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB, at 4,670,253 to 4,670,747
_RS23205
ECOLIN_RS23210: ECOLIN_RS23210 - mannose/fructose/sorbose PTS transporter subunit IIA, at 4,670,747 to 4,671,154
_RS23210
ECOLIN_RS23215: ECOLIN_RS23215 - SDR family oxidoreductase, at 4,671,164 to 4,671,970
_RS23215
ECOLIN_RS23220: ECOLIN_RS23220 - sugar-binding transcriptional regulator, at 4,672,040 to 4,672,987
_RS23220
Position (kb) 4670
4671
4672 Strain fitness (log2 ratio) -1
0
1 at 4669.952 kb on - strand, within ECOLIN_RS23200 at 4670.050 kb on + strand, within ECOLIN_RS23200 at 4670.158 kb on - strand at 4670.232 kb on + strand at 4670.232 kb on + strand at 4670.350 kb on - strand, within ECOLIN_RS23205 at 4670.370 kb on - strand, within ECOLIN_RS23205 at 4670.507 kb on - strand, within ECOLIN_RS23205 at 4670.636 kb on - strand, within ECOLIN_RS23205 at 4670.739 kb on - strand at 4670.836 kb on + strand, within ECOLIN_RS23210 at 4670.837 kb on - strand, within ECOLIN_RS23210 at 4670.961 kb on - strand, within ECOLIN_RS23210 at 4671.085 kb on - strand, within ECOLIN_RS23210 at 4671.119 kb on + strand at 4671.193 kb on + strand at 4671.194 kb on - strand at 4671.213 kb on + strand at 4671.213 kb on + strand at 4671.214 kb on - strand at 4671.303 kb on + strand, within ECOLIN_RS23215 at 4671.361 kb on - strand, within ECOLIN_RS23215 at 4672.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 4,669,952 - ECOLIN_RS23200 0.70 +0.7 4,670,050 + ECOLIN_RS23200 0.83 -0.6 4,670,158 - -0.4 4,670,232 + +0.2 4,670,232 + +0.8 4,670,350 - ECOLIN_RS23205 0.20 -0.2 4,670,370 - ECOLIN_RS23205 0.24 -0.9 4,670,507 - ECOLIN_RS23205 0.51 -0.1 4,670,636 - ECOLIN_RS23205 0.77 +0.4 4,670,739 - -0.2 4,670,836 + ECOLIN_RS23210 0.22 -0.2 4,670,837 - ECOLIN_RS23210 0.22 +0.0 4,670,961 - ECOLIN_RS23210 0.52 +0.6 4,671,085 - ECOLIN_RS23210 0.83 +0.9 4,671,119 + +0.5 4,671,193 + -0.3 4,671,194 - +0.2 4,671,213 + -0.0 4,671,213 + -0.6 4,671,214 - -0.3 4,671,303 + ECOLIN_RS23215 0.17 +1.3 4,671,361 - ECOLIN_RS23215 0.24 -0.1 4,672,052 + -0.1
Or see this region's nucleotide sequence