Experiment: Control_Nissle
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17650 and ECOLIN_RS17655 are separated by 79 nucleotides ECOLIN_RS17655 and ECOLIN_RS17660 are separated by 90 nucleotides ECOLIN_RS17660 and ECOLIN_RS17665 are separated by 104 nucleotides ECOLIN_RS17665 and ECOLIN_RS17670 are separated by 12 nucleotides
ECOLIN_RS17650: ECOLIN_RS17650 - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 3,556,331 to 3,557,569
_RS17650
ECOLIN_RS17655: ECOLIN_RS17655 - undecaprenyl-diphosphate phosphatase, at 3,557,649 to 3,558,470
_RS17655
ECOLIN_RS17660: ECOLIN_RS17660 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 3,558,561 to 3,558,929
_RS17660
ECOLIN_RS17665: ECOLIN_RS17665 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 3,559,034 to 3,559,651
_RS17665
ECOLIN_RS17670: ECOLIN_RS17670 - L-tartrate utilization transcriptional activator TtdR, at 3,559,664 to 3,560,596
_RS17670
Position (kb) 3558
3559 Strain fitness (log2 ratio) -1
0
1 at 3557.630 kb on - strand at 3557.640 kb on - strand at 3557.666 kb on - strand at 3557.666 kb on - strand at 3557.666 kb on - strand at 3557.685 kb on - strand at 3557.745 kb on - strand, within ECOLIN_RS17655 at 3558.018 kb on - strand, within ECOLIN_RS17655 at 3558.101 kb on - strand, within ECOLIN_RS17655 at 3558.289 kb on - strand, within ECOLIN_RS17655 at 3558.289 kb on - strand, within ECOLIN_RS17655 at 3558.533 kb on - strand at 3558.535 kb on - strand at 3559.034 kb on - strand at 3559.034 kb on - strand at 3559.173 kb on + strand, within ECOLIN_RS17665 at 3559.174 kb on - strand, within ECOLIN_RS17665 at 3559.260 kb on + strand, within ECOLIN_RS17665 at 3559.287 kb on + strand, within ECOLIN_RS17665 at 3559.288 kb on - strand, within ECOLIN_RS17665 at 3559.787 kb on - strand, within ECOLIN_RS17670
Per-strain Table
Position Strand Gene LocusTag Fraction Control_Nissle remove 3,557,630 - +0.1 3,557,640 - +0.4 3,557,666 - -0.3 3,557,666 - +0.1 3,557,666 - -0.2 3,557,685 - +0.2 3,557,745 - ECOLIN_RS17655 0.12 +0.2 3,558,018 - ECOLIN_RS17655 0.45 -0.1 3,558,101 - ECOLIN_RS17655 0.55 +0.1 3,558,289 - ECOLIN_RS17655 0.78 -0.5 3,558,289 - ECOLIN_RS17655 0.78 -0.2 3,558,533 - -0.6 3,558,535 - +0.0 3,559,034 - -0.5 3,559,034 - +0.4 3,559,173 + ECOLIN_RS17665 0.22 -0.2 3,559,174 - ECOLIN_RS17665 0.23 -0.1 3,559,260 + ECOLIN_RS17665 0.37 +0.3 3,559,287 + ECOLIN_RS17665 0.41 -0.0 3,559,288 - ECOLIN_RS17665 0.41 +0.5 3,559,787 - ECOLIN_RS17670 0.13 +0.5
Or see this region's nucleotide sequence