Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS09665

Experiment: Control_Nissle

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS09660 and ECOLIN_RS09665 are separated by 46 nucleotidesECOLIN_RS09665 and ECOLIN_RS09670 are separated by 12 nucleotides ECOLIN_RS09660: ECOLIN_RS09660 - catalase HPII, at 1,900,227 to 1,902,488 _RS09660 ECOLIN_RS09665: ECOLIN_RS09665 - chitin disaccharide deacetylase, at 1,902,535 to 1,903,293 _RS09665 ECOLIN_RS09670: ECOLIN_RS09670 - 6-phospho-beta-glucosidase, at 1,903,306 to 1,904,658 _RS09670 Position (kb) 1902 1903 1904Strain fitness (log2 ratio) -1 0 1at 1902.907 kb on - strand, within ECOLIN_RS09665at 1903.771 kb on + strand, within ECOLIN_RS09670

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_Nissle
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1,902,907 - ECOLIN_RS09665 0.49 -0.0
1,903,771 + ECOLIN_RS09670 0.34 +0.6

Or see this region's nucleotide sequence