Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS09010

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS09005 and ECOLIN_RS09010 are separated by 100 nucleotidesECOLIN_RS09010 and ECOLIN_RS09015 are separated by 44 nucleotides ECOLIN_RS09005: ECOLIN_RS09005 - mannose-6-phosphate isomerase, at 1,777,328 to 1,778,503 _RS09005 ECOLIN_RS09010: ECOLIN_RS09010 - YdgA family protein, at 1,778,604 to 1,780,112 _RS09010 ECOLIN_RS09015: ECOLIN_RS09015 - glucuronide uptake porin UidC, at 1,780,157 to 1,781,422 _RS09015 Position (kb) 1778 1779 1780 1781Strain fitness (log2 ratio) -1 0 1at 1779.033 kb on - strand, within ECOLIN_RS09010at 1781.030 kb on - strand, within ECOLIN_RS09015

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,779,033 - ECOLIN_RS09010 0.28 -0.1
1,781,030 - ECOLIN_RS09015 0.69 +1.1

Or see this region's nucleotide sequence