Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06900

Experiment: Bas68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS06890 and ECOLIN_RS06895 are separated by 36 nucleotidesECOLIN_RS06895 and ECOLIN_RS06900 are separated by 57 nucleotidesECOLIN_RS06900 and ECOLIN_RS06905 are separated by 51 nucleotidesECOLIN_RS06905 and ECOLIN_RS06910 overlap by 8 nucleotidesECOLIN_RS06910 and ECOLIN_RS06915 are separated by 11 nucleotides ECOLIN_RS06890: ECOLIN_RS06890 - S49 family peptidase, at 1,355,072 to 1,356,577 _RS06890 ECOLIN_RS06895: ECOLIN_RS06895 - head decoration protein, at 1,356,614 to 1,356,961 _RS06895 ECOLIN_RS06900: ECOLIN_RS06900 - minor capsid protein E, at 1,357,019 to 1,358,047 _RS06900 ECOLIN_RS06905: ECOLIN_RS06905 - DNA-packaging protein FI, at 1,358,099 to 1,358,473 _RS06905 ECOLIN_RS06910: ECOLIN_RS06910 - head-tail joining protein, at 1,358,466 to 1,358,819 _RS06910 ECOLIN_RS06915: ECOLIN_RS06915 - phage tail protein, at 1,358,831 to 1,359,409 _RS06915 Position (kb) 1357 1358 1359Strain fitness (log2 ratio) -1 0 1at 1357.787 kb on + strand, within ECOLIN_RS06900at 1358.045 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
remove
1,357,787 + ECOLIN_RS06900 0.75 +0.9
1,358,045 + +0.3

Or see this region's nucleotide sequence