Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05865

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05860 and ECOLIN_RS05865 are separated by 120 nucleotidesECOLIN_RS05865 and ECOLIN_RS05870 are separated by 75 nucleotidesECOLIN_RS05870 and ECOLIN_RS33395 are separated by 41 nucleotidesECOLIN_RS33395 and ECOLIN_RS33400 overlap by 45 nucleotides ECOLIN_RS05860: ECOLIN_RS05860 - autotransporter adhesin Ag43, at 1,197,800 to 1,200,919 _RS05860 ECOLIN_RS05865: ECOLIN_RS05865 - hypothetical protein, at 1,201,040 to 1,203,592 _RS05865 ECOLIN_RS05870: ECOLIN_RS05870 - IrmA family protein, at 1,203,668 to 1,204,123 _RS05870 ECOLIN_RS33395: ECOLIN_RS33395 - hypothetical protein, at 1,204,165 to 1,204,284 _RS33395 ECOLIN_RS33400: ECOLIN_RS33400 - hypothetical protein, at 1,204,240 to 1,204,428 _RS33400 Position (kb) 1201 1202 1203 1204Strain fitness (log2 ratio) -1 0 1at 1201.445 kb on + strand, within ECOLIN_RS05865at 1201.458 kb on - strand, within ECOLIN_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,201,445 + ECOLIN_RS05865 0.16 -0.0
1,201,458 - ECOLIN_RS05865 0.16 +0.6

Or see this region's nucleotide sequence