Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08835

Experiment: Bas68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08830 and ECOLIN_RS08835 are separated by 57 nucleotidesECOLIN_RS08835 and ECOLIN_RS08840 are separated by 11 nucleotides ECOLIN_RS08830: ECOLIN_RS08830 - MHS family MFS transporter YdfJ, at 1,740,235 to 1,741,602 _RS08830 ECOLIN_RS08835: ECOLIN_RS08835 - Zn-dependent oxidoreductase, at 1,741,660 to 1,742,679 _RS08835 ECOLIN_RS08840: ECOLIN_RS08840 - starvation-sensing protein RspA, at 1,742,691 to 1,743,905 _RS08840 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -1 0 1at 1743.502 kb on + strand, within ECOLIN_RS08840

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas68
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1,743,502 + ECOLIN_RS08840 0.67 +0.6

Or see this region's nucleotide sequence