Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04390 and ECOLIN_RS04395 are separated by 75 nucleotides ECOLIN_RS04395 and ECOLIN_RS04400 overlap by 1 nucleotides ECOLIN_RS04400 and ECOLIN_RS04405 are separated by 203 nucleotides
ECOLIN_RS04390: ECOLIN_RS04390 - fructose-6-phosphate aldolase, at 889,646 to 890,308
_RS04390
ECOLIN_RS04395: ECOLIN_RS04395 - molybdopterin-synthase adenylyltransferase MoeB, at 890,384 to 891,133
_RS04395
ECOLIN_RS04400: ECOLIN_RS04400 - molybdopterin molybdotransferase MoeA, at 891,133 to 892,368
_RS04400
ECOLIN_RS04405: ECOLIN_RS04405 - beta-aspartyl-peptidase, at 892,572 to 893,537
_RS04405
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 890.457 kb on + strand at 890.458 kb on - strand at 890.458 kb on - strand at 890.458 kb on - strand at 890.728 kb on + strand, within ECOLIN_RS04395 at 890.733 kb on - strand, within ECOLIN_RS04395 at 891.246 kb on + strand at 891.251 kb on - strand at 891.252 kb on + strand at 891.252 kb on + strand at 891.495 kb on + strand, within ECOLIN_RS04400 at 892.571 kb on + strand at 893.299 kb on - strand, within ECOLIN_RS04405 at 893.332 kb on + strand, within ECOLIN_RS04405
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 890,457 + +0.5 890,458 - -0.9 890,458 - -0.3 890,458 - -1.5 890,728 + ECOLIN_RS04395 0.46 -1.2 890,733 - ECOLIN_RS04395 0.47 -0.2 891,246 + -0.1 891,251 - -0.0 891,252 + -0.2 891,252 + +0.1 891,495 + ECOLIN_RS04400 0.29 -0.4 892,571 + -0.4 893,299 - ECOLIN_RS04405 0.75 +0.9 893,332 + ECOLIN_RS04405 0.79 -0.4
Or see this region's nucleotide sequence