Experiment: Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02275 and ECOLIN_RS02280 are separated by 525 nucleotides ECOLIN_RS02280 and ECOLIN_RS02285 are separated by 85 nucleotides ECOLIN_RS02285 and ECOLIN_RS02290 are separated by 0 nucleotides
ECOLIN_RS02275: ECOLIN_RS02275 - porphobilinogen synthase, at 464,726 to 465,700
_RS02275
ECOLIN_RS02280: ECOLIN_RS02280 - autotransporter outer membrane beta-barrel domain-containing protein, at 466,226 to 469,213
_RS02280
ECOLIN_RS02285: ECOLIN_RS02285 - hydrogen peroxide resistance inhibitor IprA, at 469,299 to 469,922
_RS02285
ECOLIN_RS02290: ECOLIN_RS02290 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 469,923 to 471,080
_RS02290
Position (kb) 466
467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.734 kb on - strand at 465.736 kb on + strand at 465.736 kb on + strand at 465.739 kb on - strand at 466.439 kb on + strand at 466.544 kb on + strand, within ECOLIN_RS02280 at 466.862 kb on + strand, within ECOLIN_RS02280 at 466.906 kb on + strand, within ECOLIN_RS02280 at 467.419 kb on + strand, within ECOLIN_RS02280 at 467.419 kb on + strand, within ECOLIN_RS02280 at 467.419 kb on + strand, within ECOLIN_RS02280 at 467.419 kb on + strand, within ECOLIN_RS02280 at 467.420 kb on - strand, within ECOLIN_RS02280 at 467.485 kb on + strand, within ECOLIN_RS02280 at 467.488 kb on + strand, within ECOLIN_RS02280 at 467.583 kb on + strand, within ECOLIN_RS02280 at 467.584 kb on - strand, within ECOLIN_RS02280 at 467.808 kb on + strand, within ECOLIN_RS02280 at 468.060 kb on + strand, within ECOLIN_RS02280 at 468.170 kb on + strand, within ECOLIN_RS02280 at 468.187 kb on + strand, within ECOLIN_RS02280 at 468.191 kb on + strand, within ECOLIN_RS02280 at 468.254 kb on + strand, within ECOLIN_RS02280 at 468.317 kb on + strand, within ECOLIN_RS02280 at 468.447 kb on - strand, within ECOLIN_RS02280 at 469.167 kb on + strand at 469.202 kb on + strand at 469.805 kb on + strand, within ECOLIN_RS02285 at 469.921 kb on - strand at 469.994 kb on + strand at 469.995 kb on - strand at 470.069 kb on + strand, within ECOLIN_RS02290 at 470.072 kb on - strand, within ECOLIN_RS02290 at 470.141 kb on - strand, within ECOLIN_RS02290 at 470.141 kb on - strand, within ECOLIN_RS02290 at 470.141 kb on - strand, within ECOLIN_RS02290 at 470.141 kb on - strand, within ECOLIN_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction Bas68 remove 465,734 - +0.1 465,736 + +0.5 465,736 + -2.1 465,739 - -1.1 466,439 + +0.2 466,544 + ECOLIN_RS02280 0.11 -0.0 466,862 + ECOLIN_RS02280 0.21 +0.6 466,906 + ECOLIN_RS02280 0.23 +0.0 467,419 + ECOLIN_RS02280 0.40 +2.2 467,419 + ECOLIN_RS02280 0.40 +0.3 467,419 + ECOLIN_RS02280 0.40 +0.0 467,419 + ECOLIN_RS02280 0.40 -0.6 467,420 - ECOLIN_RS02280 0.40 +0.5 467,485 + ECOLIN_RS02280 0.42 +0.2 467,488 + ECOLIN_RS02280 0.42 +0.1 467,583 + ECOLIN_RS02280 0.45 +0.4 467,584 - ECOLIN_RS02280 0.45 +0.9 467,808 + ECOLIN_RS02280 0.53 -0.4 468,060 + ECOLIN_RS02280 0.61 +0.2 468,170 + ECOLIN_RS02280 0.65 +0.9 468,187 + ECOLIN_RS02280 0.66 +0.2 468,191 + ECOLIN_RS02280 0.66 -0.4 468,254 + ECOLIN_RS02280 0.68 -0.2 468,317 + ECOLIN_RS02280 0.70 -1.0 468,447 - ECOLIN_RS02280 0.74 -0.2 469,167 + -0.0 469,202 + +0.8 469,805 + ECOLIN_RS02285 0.81 -1.6 469,921 - +0.7 469,994 + +0.1 469,995 - +0.9 470,069 + ECOLIN_RS02290 0.13 +0.0 470,072 - ECOLIN_RS02290 0.13 +0.6 470,141 - ECOLIN_RS02290 0.19 -0.5 470,141 - ECOLIN_RS02290 0.19 -0.1 470,141 - ECOLIN_RS02290 0.19 -0.2 470,141 - ECOLIN_RS02290 0.19 -0.1
Or see this region's nucleotide sequence