Experiment: Bas63
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS26345 and ECOLIN_RS26350 are separated by 48 nucleotides ECOLIN_RS26350 and ECOLIN_RS30030 are separated by 107 nucleotides ECOLIN_RS30030 and ECOLIN_RS26355 are separated by 12 nucleotides
ECOLIN_RS26345: ECOLIN_RS26345 - hypothetical protein, at 5,279,457 to 5,280,281
_RS26345
ECOLIN_RS26350: ECOLIN_RS26350 - hypothetical protein, at 5,280,330 to 5,280,572
_RS26350
ECOLIN_RS30030: ECOLIN_RS30030 - transposase, at 5,280,680 to 5,280,937
_RS30030
ECOLIN_RS26355: ECOLIN_RS26355 - IS30-like element IS30 family transposase, at 5,280,950 to 5,282,101
_RS26355
Position (kb) 5280
5281 Strain fitness (log2 ratio) -1
0
1 at 5279.787 kb on + strand, within ECOLIN_RS26345 at 5279.861 kb on + strand, within ECOLIN_RS26345 at 5280.031 kb on + strand, within ECOLIN_RS26345 at 5280.106 kb on + strand, within ECOLIN_RS26345 at 5280.141 kb on + strand, within ECOLIN_RS26345 at 5280.438 kb on - strand, within ECOLIN_RS26350 at 5280.747 kb on - strand, within ECOLIN_RS30030
Per-strain Table
Position Strand Gene LocusTag Fraction Bas63 remove 5,279,787 + ECOLIN_RS26345 0.40 +0.5 5,279,861 + ECOLIN_RS26345 0.49 +0.6 5,280,031 + ECOLIN_RS26345 0.70 -0.3 5,280,106 + ECOLIN_RS26345 0.79 -1.4 5,280,141 + ECOLIN_RS26345 0.83 -0.7 5,280,438 - ECOLIN_RS26350 0.44 -0.2 5,280,747 - ECOLIN_RS30030 0.26 +0.2
Or see this region's nucleotide sequence