Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS23365

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS23355 and ECOLIN_RS23360 are separated by 133 nucleotidesECOLIN_RS23360 and ECOLIN_RS23365 are separated by 164 nucleotidesECOLIN_RS23365 and ECOLIN_RS23370 are separated by 105 nucleotides ECOLIN_RS23355: ECOLIN_RS23355 - tRNA dihydrouridine(20/20a) synthase DusA, at 4,699,364 to 4,700,359 _RS23355 ECOLIN_RS23360: ECOLIN_RS23360 - envelope stress response protein PspG, at 4,700,493 to 4,700,735 _RS23360 ECOLIN_RS23365: ECOLIN_RS23365 - quinone oxidoreductase, at 4,700,900 to 4,701,883 _RS23365 ECOLIN_RS23370: ECOLIN_RS23370 - FAD-binding protein, at 4,701,989 to 4,704,037 _RS23370 Position (kb) 4700 4701 4702Strain fitness (log2 ratio) -1 0 1 2at 4700.026 kb on + strand, within ECOLIN_RS23355at 4700.026 kb on + strand, within ECOLIN_RS23355at 4700.044 kb on + strand, within ECOLIN_RS23355at 4700.044 kb on + strand, within ECOLIN_RS23355at 4700.045 kb on - strand, within ECOLIN_RS23355at 4700.168 kb on + strand, within ECOLIN_RS23355at 4700.174 kb on + strand, within ECOLIN_RS23355at 4700.175 kb on - strand, within ECOLIN_RS23355at 4700.201 kb on - strand, within ECOLIN_RS23355at 4700.215 kb on + strand, within ECOLIN_RS23355at 4700.281 kb on - strandat 4700.281 kb on - strandat 4700.594 kb on + strand, within ECOLIN_RS23360at 4700.684 kb on + strand, within ECOLIN_RS23360at 4700.760 kb on + strandat 4700.784 kb on + strandat 4700.849 kb on + strandat 4700.860 kb on + strandat 4700.860 kb on + strandat 4701.078 kb on + strand, within ECOLIN_RS23365at 4701.079 kb on - strand, within ECOLIN_RS23365at 4701.106 kb on - strand, within ECOLIN_RS23365at 4701.183 kb on - strand, within ECOLIN_RS23365at 4701.243 kb on + strand, within ECOLIN_RS23365at 4701.313 kb on + strand, within ECOLIN_RS23365at 4701.316 kb on + strand, within ECOLIN_RS23365at 4701.369 kb on - strand, within ECOLIN_RS23365at 4701.380 kb on - strand, within ECOLIN_RS23365at 4701.495 kb on + strand, within ECOLIN_RS23365at 4701.580 kb on + strand, within ECOLIN_RS23365at 4701.601 kb on - strand, within ECOLIN_RS23365at 4701.624 kb on + strand, within ECOLIN_RS23365at 4701.624 kb on + strand, within ECOLIN_RS23365at 4701.625 kb on - strand, within ECOLIN_RS23365at 4701.646 kb on + strand, within ECOLIN_RS23365at 4701.647 kb on - strand, within ECOLIN_RS23365at 4701.647 kb on - strand, within ECOLIN_RS23365at 4701.649 kb on + strand, within ECOLIN_RS23365at 4701.649 kb on + strand, within ECOLIN_RS23365at 4701.650 kb on - strand, within ECOLIN_RS23365at 4701.747 kb on + strand, within ECOLIN_RS23365at 4701.747 kb on + strand, within ECOLIN_RS23365at 4701.747 kb on + strand, within ECOLIN_RS23365at 4701.747 kb on + strand, within ECOLIN_RS23365at 4701.747 kb on + strand, within ECOLIN_RS23365at 4701.748 kb on - strand, within ECOLIN_RS23365at 4701.748 kb on - strand, within ECOLIN_RS23365at 4701.748 kb on - strand, within ECOLIN_RS23365at 4701.839 kb on + strandat 4701.840 kb on - strandat 4701.916 kb on + strandat 4701.917 kb on - strandat 4701.917 kb on - strandat 4701.917 kb on - strandat 4701.922 kb on + strandat 4701.929 kb on - strandat 4702.123 kb on + strandat 4702.124 kb on - strandat 4702.124 kb on - strandat 4702.124 kb on - strandat 4702.126 kb on - strandat 4702.126 kb on - strandat 4702.126 kb on - strandat 4702.126 kb on - strandat 4702.215 kb on + strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.216 kb on - strand, within ECOLIN_RS23370at 4702.257 kb on + strand, within ECOLIN_RS23370at 4702.258 kb on - strand, within ECOLIN_RS23370at 4702.258 kb on - strand, within ECOLIN_RS23370at 4702.265 kb on + strand, within ECOLIN_RS23370at 4702.349 kb on - strand, within ECOLIN_RS23370at 4702.415 kb on - strand, within ECOLIN_RS23370at 4702.415 kb on - strand, within ECOLIN_RS23370at 4702.415 kb on - strand, within ECOLIN_RS23370at 4702.448 kb on - strand, within ECOLIN_RS23370at 4702.479 kb on - strand, within ECOLIN_RS23370at 4702.514 kb on - strand, within ECOLIN_RS23370at 4702.577 kb on + strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.578 kb on - strand, within ECOLIN_RS23370at 4702.671 kb on + strand, within ECOLIN_RS23370at 4702.691 kb on - strand, within ECOLIN_RS23370

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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4,700,026 + ECOLIN_RS23355 0.66 -0.2
4,700,026 + ECOLIN_RS23355 0.66 -0.1
4,700,044 + ECOLIN_RS23355 0.68 -0.3
4,700,044 + ECOLIN_RS23355 0.68 -0.1
4,700,045 - ECOLIN_RS23355 0.68 +0.1
4,700,168 + ECOLIN_RS23355 0.81 +0.1
4,700,174 + ECOLIN_RS23355 0.81 -0.1
4,700,175 - ECOLIN_RS23355 0.81 -0.6
4,700,201 - ECOLIN_RS23355 0.84 +0.1
4,700,215 + ECOLIN_RS23355 0.85 -0.6
4,700,281 - -0.5
4,700,281 - -0.2
4,700,594 + ECOLIN_RS23360 0.42 +0.5
4,700,684 + ECOLIN_RS23360 0.79 +0.0
4,700,760 + +0.1
4,700,784 + -0.5
4,700,849 + -0.1
4,700,860 + -0.1
4,700,860 + -0.1
4,701,078 + ECOLIN_RS23365 0.18 -1.5
4,701,079 - ECOLIN_RS23365 0.18 -0.5
4,701,106 - ECOLIN_RS23365 0.21 -0.3
4,701,183 - ECOLIN_RS23365 0.29 -0.5
4,701,243 + ECOLIN_RS23365 0.35 -0.0
4,701,313 + ECOLIN_RS23365 0.42 -0.4
4,701,316 + ECOLIN_RS23365 0.42 -0.4
4,701,369 - ECOLIN_RS23365 0.48 +0.3
4,701,380 - ECOLIN_RS23365 0.49 +0.3
4,701,495 + ECOLIN_RS23365 0.60 +0.0
4,701,580 + ECOLIN_RS23365 0.69 -0.1
4,701,601 - ECOLIN_RS23365 0.71 +0.3
4,701,624 + ECOLIN_RS23365 0.74 -0.0
4,701,624 + ECOLIN_RS23365 0.74 -0.6
4,701,625 - ECOLIN_RS23365 0.74 +0.9
4,701,646 + ECOLIN_RS23365 0.76 -0.6
4,701,647 - ECOLIN_RS23365 0.76 -0.4
4,701,647 - ECOLIN_RS23365 0.76 -0.1
4,701,649 + ECOLIN_RS23365 0.76 -0.0
4,701,649 + ECOLIN_RS23365 0.76 -0.2
4,701,650 - ECOLIN_RS23365 0.76 +0.3
4,701,747 + ECOLIN_RS23365 0.86 -0.0
4,701,747 + ECOLIN_RS23365 0.86 -0.6
4,701,747 + ECOLIN_RS23365 0.86 -0.7
4,701,747 + ECOLIN_RS23365 0.86 +1.1
4,701,747 + ECOLIN_RS23365 0.86 +0.0
4,701,748 - ECOLIN_RS23365 0.86 -0.3
4,701,748 - ECOLIN_RS23365 0.86 +0.3
4,701,748 - ECOLIN_RS23365 0.86 +0.5
4,701,839 + +0.2
4,701,840 - +1.5
4,701,916 + -0.0
4,701,917 - +0.2
4,701,917 - +0.1
4,701,917 - +0.3
4,701,922 + +0.4
4,701,929 - +0.1
4,702,123 + -0.3
4,702,124 - +0.2
4,702,124 - +0.0
4,702,124 - +0.3
4,702,126 - -0.2
4,702,126 - +0.7
4,702,126 - -0.5
4,702,126 - -0.1
4,702,215 + ECOLIN_RS23370 0.11 -1.2
4,702,216 - ECOLIN_RS23370 0.11 +0.0
4,702,216 - ECOLIN_RS23370 0.11 +0.2
4,702,216 - ECOLIN_RS23370 0.11 -0.2
4,702,216 - ECOLIN_RS23370 0.11 +0.1
4,702,216 - ECOLIN_RS23370 0.11 -0.6
4,702,216 - ECOLIN_RS23370 0.11 -0.0
4,702,257 + ECOLIN_RS23370 0.13 -0.2
4,702,258 - ECOLIN_RS23370 0.13 +0.5
4,702,258 - ECOLIN_RS23370 0.13 -0.3
4,702,265 + ECOLIN_RS23370 0.13 -0.3
4,702,349 - ECOLIN_RS23370 0.18 +0.1
4,702,415 - ECOLIN_RS23370 0.21 +0.0
4,702,415 - ECOLIN_RS23370 0.21 -0.1
4,702,415 - ECOLIN_RS23370 0.21 -0.3
4,702,448 - ECOLIN_RS23370 0.22 -0.3
4,702,479 - ECOLIN_RS23370 0.24 -0.3
4,702,514 - ECOLIN_RS23370 0.26 +0.3
4,702,577 + ECOLIN_RS23370 0.29 -0.2
4,702,578 - ECOLIN_RS23370 0.29 +0.2
4,702,578 - ECOLIN_RS23370 0.29 +1.0
4,702,578 - ECOLIN_RS23370 0.29 +0.3
4,702,578 - ECOLIN_RS23370 0.29 -0.4
4,702,578 - ECOLIN_RS23370 0.29 +2.1
4,702,578 - ECOLIN_RS23370 0.29 +0.0
4,702,671 + ECOLIN_RS23370 0.33 +0.6
4,702,691 - ECOLIN_RS23370 0.34 +0.6

Or see this region's nucleotide sequence