Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10575

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10570 and ECOLIN_RS10575 are separated by 42 nucleotidesECOLIN_RS10575 and ECOLIN_RS10580 are separated by 432 nucleotides ECOLIN_RS10570: ECOLIN_RS10570 - S49 family peptidase, at 2,064,095 to 2,064,964 _RS10570 ECOLIN_RS10575: ECOLIN_RS10575 - hypothetical protein, at 2,065,007 to 2,065,213 _RS10575 ECOLIN_RS10580: ECOLIN_RS10580 - bacteriophage antitermination protein Q, at 2,065,646 to 2,066,335 _RS10580 Position (kb) 2065 2066Strain fitness (log2 ratio) -1 0 1 2at 2064.073 kb on + strandat 2064.119 kb on - strandat 2064.325 kb on + strand, within ECOLIN_RS10570at 2064.374 kb on - strand, within ECOLIN_RS10570at 2065.012 kb on - strandat 2065.081 kb on - strand, within ECOLIN_RS10575at 2065.355 kb on + strandat 2065.556 kb on - strandat 2065.988 kb on - strand, within ECOLIN_RS10580

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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2,064,073 + +0.1
2,064,119 - -0.1
2,064,325 + ECOLIN_RS10570 0.26 +0.5
2,064,374 - ECOLIN_RS10570 0.32 -0.1
2,065,012 - -0.5
2,065,081 - ECOLIN_RS10575 0.36 +2.3
2,065,355 + -0.6
2,065,556 - +1.4
2,065,988 - ECOLIN_RS10580 0.50 -0.8

Or see this region's nucleotide sequence