Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08590

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08585 and ECOLIN_RS31420 are separated by 199 nucleotidesECOLIN_RS31420 and ECOLIN_RS08590 overlap by 35 nucleotidesECOLIN_RS08590 and ECOLIN_RS08595 are separated by 51 nucleotides ECOLIN_RS08585: ECOLIN_RS08585 - ABC transporter ATP-binding protein/permease, at 1,691,386 to 1,693,071 _RS08585 ECOLIN_RS31420: ECOLIN_RS31420 - hypothetical protein, at 1,693,271 to 1,693,396 _RS31420 ECOLIN_RS08590: ECOLIN_RS08590 - anaerobic sulfatase maturase, at 1,693,362 to 1,694,519 _RS08590 ECOLIN_RS08595: ECOLIN_RS08595 - sulfatase, at 1,694,571 to 1,696,253 _RS08595 Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -1 0 1 2at 1695.164 kb on + strand, within ECOLIN_RS08595at 1695.410 kb on - strand, within ECOLIN_RS08595

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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1,695,164 + ECOLIN_RS08595 0.35 +2.1
1,695,410 - ECOLIN_RS08595 0.50 -0.5

Or see this region's nucleotide sequence