Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07180

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07175 and ECOLIN_RS07180 are separated by 162 nucleotidesECOLIN_RS07180 and ECOLIN_RS07185 are separated by 329 nucleotides ECOLIN_RS07175: ECOLIN_RS07175 - fatty acid metabolism transcriptional regulator FadR, at 1,398,187 to 1,398,906 _RS07175 ECOLIN_RS07180: ECOLIN_RS07180 - SpoVR family protein, at 1,399,069 to 1,400,601 _RS07180 ECOLIN_RS07185: ECOLIN_RS07185 - D-amino acid dehydrogenase, at 1,400,931 to 1,402,229 _RS07185 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -1 0 1at 1398.477 kb on + strand, within ECOLIN_RS07175at 1399.980 kb on - strand, within ECOLIN_RS07180

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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1,398,477 + ECOLIN_RS07175 0.40 -0.5
1,399,980 - ECOLIN_RS07180 0.59 -0.7

Or see this region's nucleotide sequence