Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06880

Experiment: Bas63

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS06875 and ECOLIN_RS06880 overlap by 17 nucleotidesECOLIN_RS06880 and ECOLIN_RS06885 overlap by 4 nucleotides ECOLIN_RS06875: ECOLIN_RS06875 - phage terminase large subunit family protein, at 1,351,375 to 1,353,303 _RS06875 ECOLIN_RS06880: ECOLIN_RS06880 - phage head-stabilizing protein, at 1,353,287 to 1,353,493 _RS06880 ECOLIN_RS06885: ECOLIN_RS06885 - phage portal protein, at 1,353,490 to 1,355,082 _RS06885 Position (kb) 1353 1354Strain fitness (log2 ratio) -1 0 1at 1352.395 kb on + strand, within ECOLIN_RS06875at 1352.602 kb on + strand, within ECOLIN_RS06875at 1352.603 kb on - strand, within ECOLIN_RS06875at 1353.154 kb on + strandat 1353.392 kb on - strand, within ECOLIN_RS06880at 1353.732 kb on + strand, within ECOLIN_RS06885at 1353.732 kb on + strand, within ECOLIN_RS06885

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
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1,352,395 + ECOLIN_RS06875 0.53 -0.6
1,352,602 + ECOLIN_RS06875 0.64 -0.0
1,352,603 - ECOLIN_RS06875 0.64 -1.1
1,353,154 + +0.3
1,353,392 - ECOLIN_RS06880 0.51 -0.6
1,353,732 + ECOLIN_RS06885 0.15 +1.2
1,353,732 + ECOLIN_RS06885 0.15 -0.5

Or see this region's nucleotide sequence