Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08560

Experiment: Bas63

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS08555 and ECOLIN_RS08560 are separated by 130 nucleotidesECOLIN_RS08560 and ECOLIN_RS08565 are separated by 155 nucleotides ECOLIN_RS08555: ECOLIN_RS08555 - glycoside hydrolase family 10 protein, at 1,681,233 to 1,682,552 _RS08555 ECOLIN_RS08560: ECOLIN_RS08560 - acid resistance gamma-aminobutyrate antiporter GadC, at 1,682,683 to 1,684,218 _RS08560 ECOLIN_RS08565: ECOLIN_RS08565 - glutamate decarboxylase, at 1,684,374 to 1,685,774 _RS08565 Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -1 0 1at 1681.706 kb on + strand, within ECOLIN_RS08555at 1682.828 kb on + strandat 1682.851 kb on + strand, within ECOLIN_RS08560at 1683.507 kb on + strand, within ECOLIN_RS08560at 1684.079 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas63
remove
1,681,706 + ECOLIN_RS08555 0.36 -0.5
1,682,828 + +0.7
1,682,851 + ECOLIN_RS08560 0.11 -0.5
1,683,507 + ECOLIN_RS08560 0.54 -0.1
1,684,079 - +0.1

Or see this region's nucleotide sequence