Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17400

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17395 and ECOLIN_RS17400 are separated by 74 nucleotidesECOLIN_RS17400 and ECOLIN_RS17405 are separated by 234 nucleotides ECOLIN_RS17395: ECOLIN_RS17395 - cell division protein FtsP, at 3,504,332 to 3,505,744 _RS17395 ECOLIN_RS17400: ECOLIN_RS17400 - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,505,819 to 3,506,556 _RS17400 ECOLIN_RS17405: ECOLIN_RS17405 - DNA topoisomerase IV subunit A, at 3,506,791 to 3,509,049 _RS17405 Position (kb) 3505 3506 3507Strain fitness (log2 ratio) -1 0 1at 3505.590 kb on - strand, within ECOLIN_RS17395at 3506.590 kb on + strandat 3506.623 kb on - strandat 3506.793 kb on - strandat 3506.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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3,505,590 - ECOLIN_RS17395 0.89 -0.3
3,506,590 + +0.1
3,506,623 - +0.4
3,506,793 - -0.6
3,506,793 - -0.1

Or see this region's nucleotide sequence