Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07930

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07925 and ECOLIN_RS07930 are separated by 50 nucleotidesECOLIN_RS07930 and ECOLIN_RS07935 are separated by 155 nucleotides ECOLIN_RS07925: ECOLIN_RS07925 - monomeric porin OmpG, at 1,550,117 to 1,551,022 _RS07925 ECOLIN_RS07930: ECOLIN_RS07930 - LacI family DNA-binding transcriptional regulator, at 1,551,073 to 1,552,071 _RS07930 ECOLIN_RS07935: ECOLIN_RS07935 - YcjX family protein, at 1,552,227 to 1,553,624 _RS07935 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -1 0 1at 1551.457 kb on - strand, within ECOLIN_RS07930at 1552.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,551,457 - ECOLIN_RS07930 0.38 +0.1
1,552,060 - +0.2

Or see this region's nucleotide sequence