Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07910

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07905 and ECOLIN_RS07910 overlap by 4 nucleotidesECOLIN_RS07910 and ECOLIN_RS07915 overlap by 4 nucleotidesECOLIN_RS07915 and ECOLIN_RS07920 are separated by 13 nucleotides ECOLIN_RS07905: ECOLIN_RS07905 - Gfo/Idh/MocA family oxidoreductase, at 1,545,001 to 1,546,056 _RS07905 ECOLIN_RS07910: ECOLIN_RS07910 - kojibiose phosphorylase, at 1,546,053 to 1,548,320 _RS07910 ECOLIN_RS07915: ECOLIN_RS07915 - beta-phosphoglucomutase, at 1,548,317 to 1,548,976 _RS07915 ECOLIN_RS07920: ECOLIN_RS07920 - ABC transporter ATP-binding protein, at 1,548,990 to 1,550,072 _RS07920 Position (kb) 1546 1547 1548 1549Strain fitness (log2 ratio) -1 0 1at 1545.947 kb on + strand, within ECOLIN_RS07905at 1545.954 kb on + strandat 1545.989 kb on - strandat 1545.989 kb on - strandat 1546.943 kb on - strand, within ECOLIN_RS07910

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,545,947 + ECOLIN_RS07905 0.90 +0.6
1,545,954 + +0.6
1,545,989 - +0.4
1,545,989 - -0.0
1,546,943 - ECOLIN_RS07910 0.39 -0.5

Or see this region's nucleotide sequence