Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00030 and ECOLIN_RS00035 are separated by 59 nucleotides ECOLIN_RS00035 and ECOLIN_RS00040 are separated by 69 nucleotides ECOLIN_RS00040 and ECOLIN_RS00045 are separated by 278 nucleotides
ECOLIN_RS00030: ECOLIN_RS00030 - DUF2502 domain-containing protein, at 5,258 to 5,554
_RS00030
ECOLIN_RS00035: ECOLIN_RS00035 - peroxide stress protein YaaA, at 5,614 to 6,390
_RS00035
ECOLIN_RS00040: ECOLIN_RS00040 - sodium:alanine symporter family protein, at 6,460 to 7,890
_RS00040
ECOLIN_RS00045: ECOLIN_RS00045 - transaldolase, at 8,169 to 9,122
_RS00045
Position (kb) 6
7
8 Strain fitness (log2 ratio) -1
0
1
2 at 5.494 kb on + strand, within ECOLIN_RS00030 at 5.783 kb on - strand, within ECOLIN_RS00035 at 5.888 kb on - strand, within ECOLIN_RS00035 at 5.894 kb on - strand, within ECOLIN_RS00035 at 5.944 kb on - strand, within ECOLIN_RS00035 at 6.047 kb on + strand, within ECOLIN_RS00035 at 6.048 kb on - strand, within ECOLIN_RS00035 at 6.048 kb on - strand, within ECOLIN_RS00035 at 6.324 kb on + strand at 6.378 kb on + strand at 6.461 kb on + strand at 6.565 kb on + strand at 6.586 kb on - strand at 6.607 kb on + strand, within ECOLIN_RS00040 at 6.607 kb on + strand, within ECOLIN_RS00040 at 6.782 kb on + strand, within ECOLIN_RS00040 at 6.788 kb on + strand, within ECOLIN_RS00040 at 6.788 kb on + strand, within ECOLIN_RS00040 at 6.789 kb on - strand, within ECOLIN_RS00040 at 6.789 kb on - strand, within ECOLIN_RS00040 at 6.895 kb on - strand, within ECOLIN_RS00040 at 7.090 kb on - strand, within ECOLIN_RS00040 at 7.110 kb on + strand, within ECOLIN_RS00040 at 7.111 kb on - strand, within ECOLIN_RS00040 at 7.123 kb on + strand, within ECOLIN_RS00040 at 7.128 kb on + strand, within ECOLIN_RS00040 at 7.129 kb on - strand, within ECOLIN_RS00040 at 7.342 kb on - strand, within ECOLIN_RS00040 at 7.344 kb on + strand, within ECOLIN_RS00040 at 7.345 kb on - strand, within ECOLIN_RS00040 at 7.494 kb on + strand, within ECOLIN_RS00040 at 7.495 kb on - strand, within ECOLIN_RS00040 at 7.497 kb on - strand, within ECOLIN_RS00040 at 7.497 kb on - strand, within ECOLIN_RS00040 at 7.591 kb on - strand, within ECOLIN_RS00040 at 7.744 kb on - strand, within ECOLIN_RS00040 at 7.957 kb on - strand at 7.960 kb on + strand at 7.961 kb on - strand at 7.973 kb on - strand at 7.995 kb on + strand at 7.995 kb on + strand at 7.995 kb on + strand at 7.996 kb on - strand at 7.996 kb on - strand at 7.996 kb on - strand at 8.247 kb on + strand at 8.315 kb on + strand, within ECOLIN_RS00045 at 8.724 kb on + strand, within ECOLIN_RS00045 at 8.725 kb on - strand, within ECOLIN_RS00045 at 8.834 kb on + strand, within ECOLIN_RS00045
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 5,494 + ECOLIN_RS00030 0.79 -0.7 5,783 - ECOLIN_RS00035 0.22 -0.4 5,888 - ECOLIN_RS00035 0.35 +0.3 5,894 - ECOLIN_RS00035 0.36 -0.0 5,944 - ECOLIN_RS00035 0.42 -0.8 6,047 + ECOLIN_RS00035 0.56 +0.1 6,048 - ECOLIN_RS00035 0.56 +0.4 6,048 - ECOLIN_RS00035 0.56 +0.1 6,324 + -0.4 6,378 + -0.3 6,461 + -0.2 6,565 + +0.1 6,586 - -1.1 6,607 + ECOLIN_RS00040 0.10 +2.3 6,607 + ECOLIN_RS00040 0.10 -0.6 6,782 + ECOLIN_RS00040 0.23 +1.4 6,788 + ECOLIN_RS00040 0.23 +0.3 6,788 + ECOLIN_RS00040 0.23 -0.2 6,789 - ECOLIN_RS00040 0.23 -0.7 6,789 - ECOLIN_RS00040 0.23 +0.1 6,895 - ECOLIN_RS00040 0.30 -0.0 7,090 - ECOLIN_RS00040 0.44 -0.4 7,110 + ECOLIN_RS00040 0.45 -0.5 7,111 - ECOLIN_RS00040 0.45 +0.3 7,123 + ECOLIN_RS00040 0.46 -0.9 7,128 + ECOLIN_RS00040 0.47 +1.0 7,129 - ECOLIN_RS00040 0.47 -0.2 7,342 - ECOLIN_RS00040 0.62 +0.4 7,344 + ECOLIN_RS00040 0.62 -0.0 7,345 - ECOLIN_RS00040 0.62 -0.1 7,494 + ECOLIN_RS00040 0.72 -0.6 7,495 - ECOLIN_RS00040 0.72 -0.3 7,497 - ECOLIN_RS00040 0.72 +0.3 7,497 - ECOLIN_RS00040 0.72 -0.6 7,591 - ECOLIN_RS00040 0.79 -0.1 7,744 - ECOLIN_RS00040 0.90 +0.5 7,957 - -0.6 7,960 + +0.5 7,961 - -0.5 7,973 - +0.5 7,995 + -0.4 7,995 + -0.7 7,995 + -1.5 7,996 - -0.2 7,996 - -0.1 7,996 - +0.5 8,247 + +0.4 8,315 + ECOLIN_RS00045 0.15 +0.2 8,724 + ECOLIN_RS00045 0.58 +0.7 8,725 - ECOLIN_RS00045 0.58 -0.4 8,834 + ECOLIN_RS00045 0.70 -0.3
Or see this region's nucleotide sequence