Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS31295

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS33370 and ECOLIN_RS27940 are separated by 248 nucleotidesECOLIN_RS27940 and ECOLIN_RS31295 are separated by 62 nucleotidesECOLIN_RS31295 and ECOLIN_RS05435 are separated by 149 nucleotidesECOLIN_RS05435 and ECOLIN_RS05440 are separated by 230 nucleotides ECOLIN_RS33370: ECOLIN_RS33370 - class II D-tagatose-bisphosphate aldolase, non-catalytic subunit, at 1,112,618 to 1,113,241 _RS33370 ECOLIN_RS27940: ECOLIN_RS27940 - DeoR family transcriptional regulator, at 1,113,490 to 1,114,060 _RS27940 ECOLIN_RS31295: ECOLIN_RS31295 - galactarate dehydratase, at 1,114,123 to 1,115,519 _RS31295 ECOLIN_RS05435: ECOLIN_RS05435 - hypothetical protein, at 1,115,669 to 1,116,173 _RS05435 ECOLIN_RS05440: ECOLIN_RS05440 - beta-ketoacyl-ACP synthase, at 1,116,404 to 1,117,633 _RS05440 Position (kb) 1114 1115 1116Strain fitness (log2 ratio) -1 0 1at 1115.106 kb on - strand, within ECOLIN_RS31295at 1115.840 kb on - strand, within ECOLIN_RS05435

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,115,106 - ECOLIN_RS31295 0.70 +1.0
1,115,840 - ECOLIN_RS05435 0.34 -0.1

Or see this region's nucleotide sequence