Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS27745

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS02195 and ECOLIN_RS27745 are separated by 36 nucleotidesECOLIN_RS27745 and ECOLIN_RS02200 are separated by 66 nucleotidesECOLIN_RS02200 and ECOLIN_RS02205 are separated by 227 nucleotides ECOLIN_RS02195: ECOLIN_RS02195 - DNA-binding transcriptional repressor LacI, at 451,240 to 452,323 _RS02195 ECOLIN_RS27745: ECOLIN_RS27745 - GlxA family transcriptional regulator, at 452,360 to 452,458 _RS27745 ECOLIN_RS02200: ECOLIN_RS02200 - DUF2058 domain-containing protein, at 452,525 to 453,064 _RS02200 ECOLIN_RS02205: ECOLIN_RS02205 - S-formylglutathione hydrolase, at 453,292 to 454,125 _RS02205 Position (kb) 452 453Strain fitness (log2 ratio) -1 0 1at 451.850 kb on - strand, within ECOLIN_RS02195at 452.185 kb on - strand, within ECOLIN_RS02195at 452.420 kb on - strand, within ECOLIN_RS27745at 452.464 kb on + strandat 452.487 kb on + strandat 452.487 kb on + strandat 452.905 kb on + strand, within ECOLIN_RS02200at 452.974 kb on + strand, within ECOLIN_RS02200at 453.068 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
451,850 - ECOLIN_RS02195 0.56 +0.2
452,185 - ECOLIN_RS02195 0.87 -0.2
452,420 - ECOLIN_RS27745 0.61 -0.6
452,464 + -0.7
452,487 + +0.1
452,487 + -1.0
452,905 + ECOLIN_RS02200 0.70 +0.1
452,974 + ECOLIN_RS02200 0.83 +0.8
453,068 + -0.2

Or see this region's nucleotide sequence