Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS26885

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS26880 and ECOLIN_RS30210 overlap by 2 nucleotidesECOLIN_RS30210 and ECOLIN_RS26885 are separated by 18 nucleotidesECOLIN_RS26885 and ECOLIN_RS33200 are separated by 102 nucleotidesECOLIN_RS33200 and ECOLIN_RS26890 are separated by 267 nucleotides ECOLIN_RS26880: ECOLIN_RS26880 - homoserine O-succinyltransferase, at 5,381,165 to 5,381,794 _RS26880 ECOLIN_RS30210: ECOLIN_RS30210 - ClbS/DfsB family four-helix bundle protein, at 5,381,793 to 5,381,945 _RS30210 ECOLIN_RS26885: ECOLIN_RS26885 - ISL3-like element ISEc53 family transposase, at 5,381,964 to 5,383,184 _RS26885 ECOLIN_RS33200: ECOLIN_RS33200 - restriction endonuclease, at 5,383,287 to 5,383,492 _RS33200 ECOLIN_RS26890: ECOLIN_RS26890 - helicase YjhR, at 5,383,760 to 5,384,866 _RS26890 Position (kb) 5381 5382 5383 5384Strain fitness (log2 ratio) -1 0 1at 5383.335 kb on - strand, within ECOLIN_RS33200at 5383.789 kb on - strandat 5383.791 kb on - strandat 5383.855 kb on - strandat 5384.043 kb on - strand, within ECOLIN_RS26890

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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5,383,335 - ECOLIN_RS33200 0.23 +1.0
5,383,789 - -0.4
5,383,791 - -0.2
5,383,855 - +0.4
5,384,043 - ECOLIN_RS26890 0.26 -0.8

Or see this region's nucleotide sequence