Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13130

Experiment: Bas52

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS13125 and ECOLIN_RS13130 are separated by 3 nucleotidesECOLIN_RS13130 and ECOLIN_RS13135 overlap by 1 nucleotides ECOLIN_RS13125: ECOLIN_RS13125 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,624,365 to 2,625,504 _RS13125 ECOLIN_RS13130: ECOLIN_RS13130 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 2,625,508 to 2,626,476 _RS13130 ECOLIN_RS13135: ECOLIN_RS13135 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 2,626,476 to 2,628,458 _RS13135 Position (kb) 2625 2626 2627Strain fitness (log2 ratio) -1 0 1at 2624.629 kb on - strand, within ECOLIN_RS13125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
remove
2,624,629 - ECOLIN_RS13125 0.23 +0.6

Or see this region's nucleotide sequence