Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS06870

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS06865 and ECOLIN_RS06870 are separated by 317 nucleotidesECOLIN_RS06870 and ECOLIN_RS06875 overlap by 29 nucleotides ECOLIN_RS06865: ECOLIN_RS06865 - terminase small subunit, at 1,350,271 to 1,350,537 _RS06865 ECOLIN_RS06870: ECOLIN_RS06870 - terminase small subunit, at 1,350,855 to 1,351,403 _RS06870 ECOLIN_RS06875: ECOLIN_RS06875 - phage terminase large subunit family protein, at 1,351,375 to 1,353,303 _RS06875 Position (kb) 1350 1351 1352Strain fitness (log2 ratio) -1 0 1at 1352.395 kb on + strand, within ECOLIN_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,352,395 + ECOLIN_RS06875 0.53 -0.1

Or see this region's nucleotide sequence