Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03640

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS03630 and ECOLIN_RS03635 are separated by 13 nucleotidesECOLIN_RS03635 and ECOLIN_RS03640 overlap by 4 nucleotidesECOLIN_RS03640 and ECOLIN_RS03645 are separated by 35 nucleotidesECOLIN_RS03645 and ECOLIN_RS03650 are separated by 59 nucleotides ECOLIN_RS03630: ECOLIN_RS03630 - SLC13 family permease, at 743,928 to 745,208 _RS03630 ECOLIN_RS03635: ECOLIN_RS03635 - YhcH/YjgK/YiaL family protein, at 745,222 to 745,692 _RS03635 ECOLIN_RS03640: ECOLIN_RS03640 - exo-alpha-sialidase, at 745,689 to 746,858 _RS03640 ECOLIN_RS03645: ECOLIN_RS03645 - TerC family protein, at 746,894 to 747,652 _RS03645 ECOLIN_RS03650: ECOLIN_RS03650 - dihydrodipicolinate synthase family protein, at 747,712 to 748,599 _RS03650 Position (kb) 745 746 747Strain fitness (log2 ratio) -1 0 1 2at 744.859 kb on + strand, within ECOLIN_RS03630at 744.912 kb on + strand, within ECOLIN_RS03630at 746.032 kb on - strand, within ECOLIN_RS03640at 746.179 kb on + strand, within ECOLIN_RS03640

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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744,859 + ECOLIN_RS03630 0.73 -0.3
744,912 + ECOLIN_RS03630 0.77 +0.1
746,032 - ECOLIN_RS03640 0.29 +0.1
746,179 + ECOLIN_RS03640 0.42 +2.6

Or see this region's nucleotide sequence