Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08450

Experiment: Bas52

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08445 and ECOLIN_RS08450 are separated by 174 nucleotidesECOLIN_RS08450 and ECOLIN_RS08455 are separated by 95 nucleotides ECOLIN_RS08445: ECOLIN_RS08445 - flavin reductase family protein, at 1,656,100 to 1,656,669 _RS08445 ECOLIN_RS08450: ECOLIN_RS08450 - N-hydroxyarylamine O-acetyltransferase, at 1,656,844 to 1,657,689 _RS08450 ECOLIN_RS08455: ECOLIN_RS08455 - PhzF family isomerase, at 1,657,785 to 1,658,678 _RS08455 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -1 0 1 2at 1657.571 kb on - strand, within ECOLIN_RS08450at 1658.419 kb on - strand, within ECOLIN_RS08455at 1658.434 kb on - strand, within ECOLIN_RS08455

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas52
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1,657,571 - ECOLIN_RS08450 0.86 +2.6
1,658,419 - ECOLIN_RS08455 0.71 -0.5
1,658,434 - ECOLIN_RS08455 0.73 -0.7

Or see this region's nucleotide sequence