Experiment: Bas52
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS08115 and ECOLIN_RS08120 overlap by 4 nucleotides ECOLIN_RS08120 and ECOLIN_RS08125 are separated by 7 nucleotides ECOLIN_RS08125 and ECOLIN_RS08145 are separated by 374 nucleotides ECOLIN_RS08145 and ECOLIN_RS08150 are separated by 218 nucleotides
ECOLIN_RS08115: ECOLIN_RS08115 - YdbH family protein, at 1,586,280 to 1,588,919
_RS08115
ECOLIN_RS08120: ECOLIN_RS08120 - YnbE family lipoprotein, at 1,588,916 to 1,589,101
_RS08120
ECOLIN_RS08125: ECOLIN_RS08125 - YdbL family protein, at 1,589,109 to 1,589,435
_RS08125
ECOLIN_RS08145: ECOLIN_RS08145 - EntS/YbdA MFS transporter, at 1,589,810 to 1,598,411
_RS08145
ECOLIN_RS08150: ECOLIN_RS08150 - pyridoxine 4-dehydrogenase, at 1,598,630 to 1,599,490
_RS08150
Position (kb) 1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599 Strain fitness (log2 ratio) -1
0
1 at 1590.446 kb on - strand at 1594.374 kb on - strand, within ECOLIN_RS08145 at 1595.135 kb on + strand, within ECOLIN_RS08145 at 1596.464 kb on + strand, within ECOLIN_RS08145 at 1596.972 kb on + strand, within ECOLIN_RS08145 at 1597.411 kb on + strand, within ECOLIN_RS08145 at 1599.245 kb on + strand, within ECOLIN_RS08150
Per-strain Table
Position Strand Gene LocusTag Fraction Bas52 remove 1,590,446 - +1.3 1,594,374 - ECOLIN_RS08145 0.53 -1.2 1,595,135 + ECOLIN_RS08145 0.62 -1.1 1,596,464 + ECOLIN_RS08145 0.77 -0.6 1,596,972 + ECOLIN_RS08145 0.83 +0.6 1,597,411 + ECOLIN_RS08145 0.88 -0.8 1,599,245 + ECOLIN_RS08150 0.71 -0.7
Or see this region's nucleotide sequence