Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24460 and ECOLIN_RS24465 are separated by 107 nucleotides ECOLIN_RS24465 and ECOLIN_RS24470 are separated by 88 nucleotides ECOLIN_RS24470 and ECOLIN_RS24475 are separated by 128 nucleotides
ECOLIN_RS24460: ECOLIN_RS24460 - DMT family transporter, at 4,914,069 to 4,915,034
_RS24460
ECOLIN_RS24465: ECOLIN_RS24465 - NAD(P)H:quinone oxidoreductase, at 4,915,142 to 4,916,002
_RS24465
ECOLIN_RS24470: ECOLIN_RS24470 - helix-turn-helix domain-containing protein, at 4,916,091 to 4,916,471
_RS24470
ECOLIN_RS24475: ECOLIN_RS24475 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,916,600 to 4,918,543
_RS24475
Position (kb) 4915
4916
4917 Strain fitness (log2 ratio) -1
0
1 at 4914.336 kb on - strand, within ECOLIN_RS24460 at 4914.517 kb on + strand, within ECOLIN_RS24460 at 4914.517 kb on + strand, within ECOLIN_RS24460 at 4914.567 kb on - strand, within ECOLIN_RS24460 at 4914.806 kb on + strand, within ECOLIN_RS24460 at 4914.806 kb on + strand, within ECOLIN_RS24460 at 4914.807 kb on - strand, within ECOLIN_RS24460 at 4914.807 kb on - strand, within ECOLIN_RS24460 at 4915.170 kb on - strand at 4915.688 kb on + strand, within ECOLIN_RS24465 at 4915.688 kb on + strand, within ECOLIN_RS24465 at 4915.688 kb on + strand, within ECOLIN_RS24465 at 4915.701 kb on + strand, within ECOLIN_RS24465 at 4915.738 kb on + strand, within ECOLIN_RS24465 at 4915.991 kb on - strand at 4915.993 kb on + strand at 4916.036 kb on + strand at 4916.037 kb on - strand at 4916.299 kb on + strand, within ECOLIN_RS24470 at 4916.358 kb on + strand, within ECOLIN_RS24470 at 4916.602 kb on - strand at 4916.602 kb on - strand at 4916.686 kb on + strand at 4916.687 kb on - strand at 4916.884 kb on + strand, within ECOLIN_RS24475
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 4,914,336 - ECOLIN_RS24460 0.28 -0.0 4,914,517 + ECOLIN_RS24460 0.46 -0.1 4,914,517 + ECOLIN_RS24460 0.46 -0.2 4,914,567 - ECOLIN_RS24460 0.52 +0.5 4,914,806 + ECOLIN_RS24460 0.76 -0.0 4,914,806 + ECOLIN_RS24460 0.76 +0.0 4,914,807 - ECOLIN_RS24460 0.76 +0.6 4,914,807 - ECOLIN_RS24460 0.76 -0.7 4,915,170 - -0.5 4,915,688 + ECOLIN_RS24465 0.63 -0.2 4,915,688 + ECOLIN_RS24465 0.63 -0.7 4,915,688 + ECOLIN_RS24465 0.63 -0.4 4,915,701 + ECOLIN_RS24465 0.65 -0.1 4,915,738 + ECOLIN_RS24465 0.69 -0.1 4,915,991 - +0.1 4,915,993 + -1.0 4,916,036 + -0.2 4,916,037 - -0.1 4,916,299 + ECOLIN_RS24470 0.55 -0.1 4,916,358 + ECOLIN_RS24470 0.70 +0.3 4,916,602 - -0.5 4,916,602 - +0.3 4,916,686 + +0.0 4,916,687 - -0.4 4,916,884 + ECOLIN_RS24475 0.15 +0.3
Or see this region's nucleotide sequence