Experiment: RB51
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23160 and ECOLIN_RS23165 are separated by 59 nucleotides ECOLIN_RS23165 and ECOLIN_RS23170 are separated by 42 nucleotides ECOLIN_RS23170 and ECOLIN_RS23175 are separated by 170 nucleotides
ECOLIN_RS23160: ECOLIN_RS23160 - methionine synthase, at 4,659,756 to 4,663,439
_RS23160
ECOLIN_RS23165: ECOLIN_RS23165 - hypothetical protein, at 4,663,499 to 4,663,819
_RS23165
ECOLIN_RS23170: ECOLIN_RS23170 - hypothetical protein, at 4,663,862 to 4,664,311
_RS23170
ECOLIN_RS23175: ECOLIN_RS23175 - Na/Pi cotransporter family protein, at 4,664,482 to 4,666,113
_RS23175
Position (kb) 4663
4664
4665 Strain fitness (log2 ratio) -1
0
1 at 4663.060 kb on - strand, within ECOLIN_RS23160 at 4663.079 kb on + strand at 4663.087 kb on - strand at 4663.297 kb on - strand at 4663.320 kb on + strand at 4663.363 kb on - strand at 4663.681 kb on + strand, within ECOLIN_RS23165 at 4664.248 kb on + strand, within ECOLIN_RS23170 at 4664.375 kb on - strand at 4664.539 kb on - strand at 4664.664 kb on + strand, within ECOLIN_RS23175 at 4664.665 kb on - strand, within ECOLIN_RS23175 at 4664.793 kb on - strand, within ECOLIN_RS23175 at 4664.811 kb on - strand, within ECOLIN_RS23175 at 4664.811 kb on - strand, within ECOLIN_RS23175 at 4664.811 kb on - strand, within ECOLIN_RS23175 at 4665.216 kb on + strand, within ECOLIN_RS23175 at 4665.310 kb on + strand, within ECOLIN_RS23175 at 4665.310 kb on + strand, within ECOLIN_RS23175
Per-strain Table
Position Strand Gene LocusTag Fraction RB51 remove 4,663,060 - ECOLIN_RS23160 0.90 +0.8 4,663,079 + -0.2 4,663,087 - +0.4 4,663,297 - +0.5 4,663,320 + +0.1 4,663,363 - +0.0 4,663,681 + ECOLIN_RS23165 0.57 -1.2 4,664,248 + ECOLIN_RS23170 0.86 -0.1 4,664,375 - +0.9 4,664,539 - -0.1 4,664,664 + ECOLIN_RS23175 0.11 +0.0 4,664,665 - ECOLIN_RS23175 0.11 -0.6 4,664,793 - ECOLIN_RS23175 0.19 +0.1 4,664,811 - ECOLIN_RS23175 0.20 -0.3 4,664,811 - ECOLIN_RS23175 0.20 -0.8 4,664,811 - ECOLIN_RS23175 0.20 -0.1 4,665,216 + ECOLIN_RS23175 0.45 -0.1 4,665,310 + ECOLIN_RS23175 0.51 +0.1 4,665,310 + ECOLIN_RS23175 0.51 -0.2
Or see this region's nucleotide sequence