Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS09020

Experiment: RB51

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS09015 and ECOLIN_RS09020 are separated by 38 nucleotidesECOLIN_RS09020 and ECOLIN_RS09025 overlap by 4 nucleotides ECOLIN_RS09015: ECOLIN_RS09015 - glucuronide uptake porin UidC, at 1,780,157 to 1,781,422 _RS09015 ECOLIN_RS09020: ECOLIN_RS09020 - glucuronide transporter, at 1,781,461 to 1,782,834 _RS09020 ECOLIN_RS09025: ECOLIN_RS09025 - beta-glucuronidase, at 1,782,831 to 1,784,642 _RS09025 Position (kb) 1781 1782 1783Strain fitness (log2 ratio) -1 0 1 2at 1781.030 kb on - strand, within ECOLIN_RS09015at 1781.912 kb on + strand, within ECOLIN_RS09020at 1782.497 kb on + strand, within ECOLIN_RS09020

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Per-strain Table

Position Strand Gene LocusTag Fraction RB51
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1,781,030 - ECOLIN_RS09015 0.69 -0.3
1,781,912 + ECOLIN_RS09020 0.33 +1.0
1,782,497 + ECOLIN_RS09020 0.75 +2.0

Or see this region's nucleotide sequence